YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|156564361, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDGHQEKDL DDDVYGGDPW LFNNSSGNSQ EHKRFLKFKE VFLPCMYLVV FVLGLLGNSL  60
   61 VLIIYIFYQR LRSLTDVFLL NLPLADLVFV CTLPFWAYAG TYEWVFGTAM CKTLRSMYAM 120
  121 NFYVSMLTLT CITVDRFVVV VQATKAFNRQ AKWKIWGQVT CLLIWVVSLL VSLPQIIYSR 180
  181 VGHIDRLICQ FHNEAISTVV LVLQMTLGFF LPLLTMILCY SGIIKTLLHA RNFQKHKSLK 240
  241 IIFLVVATFL LTQTPFNIAM LIQWISWEYS TITSFQYVVL VTEAIAYLRA CLNPVLYAFV 300
  301 GLKFRKNLWK LMKDISCLSR LGVSSQWKSS EDNSKTCSAS HNAETTSMFQ L

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.90
Transmembrane Helix	45	68	0.91
Cytoplasmic	69	76	0.86
Transmembrane Helix	77	99	0.90
Non-Cytoplasmic	100	118	0.85
Transmembrane Helix	119	139	0.85
Cytoplasmic	140	154	0.89
Transmembrane Helix	155	178	0.88
Non-Cytoplasmic	179	200	0.92
Transmembrane Helix	201	224	0.85
Cytoplasmic	225	240	0.86
Transmembrane Helix	241	262	0.93
Non-Cytoplasmic	263	283	0.79
Transmembrane Helix	284	302	0.87
Cytoplasmic	303	351	0.93