YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MOT1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.66
Transmembrane Helix	16	37	0.91
Non-Cytoplasmic	38	57	0.59
Transmembrane Helix	58	80	0.77
Cytoplasmic	81	86	0.62
Transmembrane Helix	87	106	0.81
Non-Cytoplasmic	107	111	0.72
Transmembrane Helix	112	133	0.87
Cytoplasmic	134	144	0.75
Transmembrane Helix	145	164	0.88
Non-Cytoplasmic	165	175	0.60
Transmembrane Helix	176	195	0.90
Cytoplasmic	196	254	0.94
Transmembrane Helix	255	277	0.90
Non-Cytoplasmic	278	290	0.83
Transmembrane Helix	291	310	0.87
Cytoplasmic	311	321	0.82
Transmembrane Helix	322	341	0.93
Non-Cytoplasmic	342	348	0.72
Transmembrane Helix	349	368	0.93
Cytoplasmic	369	379	0.78
Transmembrane Helix	380	402	0.88
Non-Cytoplasmic	403	413	0.91
Transmembrane Helix	414	436	0.88
Cytoplasmic	437	494	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPAIGGPVG YTPPDGGWGW AVVVGAFISI GFSYAFPKSI TVFFKEIEII FSATTSEVSW  60
   61 ISSIMLAVMY AGGPISSILV NKYGSRPVMI AGGCLSGCGL IAASFCNTVQ ELYFCIGVIG 120
  121 GLGLAFNLNP ALTMIGKYFY KKRPLANGLA MAGSPVFLST LAPLNQAFFG IFGWRGSFLI 180
  181 LGGLLLNCCV AGSLMRPIGP QQGKVEKLKS KESLQEAGKS DANTDLIGGS PKGEKLSVFQ 240
  241 TVNKFLDLSL FTHRGFLLYL SGNVVMFFGL FTPLVFLSNY GKSKHFSSEK SAFLLSILAF 300
  301 VDMVARPSMG LAANTRWIRP RVQYFFAASV VANGVCHLLA PLSTTYVGFC IYAGVFGFAF 360
  361 GWLSSVLFET LMDLVGPQRF SSAVGLVTIV ECCPVLLGPP LLGRLNDMYG DYKYTYWACG 420
  421 VILIIAGLYL FIGMGINYRL VAKEQKAEEK KRDGKEDETS TDVDEKPKKT MKETQSPAPL 480
  481 QNSSGDPAEE ESPV