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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|9507011, gi|2...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTWRPSVV SVVGPVGLFL VLLARGCLAE EPPRFIREPK DQIGVSGGVA SFVCQATGDP  60
   61 KPRVTWNKKG KKVNSQRFET IDFDESSGAV LRIQPLRTPR DENVYECVAQ NSVGEITVHA 120
  121 KLTVLREDQL PPGFPNIDMG PQLKVVERTR TATMLCAASG NPDPEITWFK DFLPVDPSAS 180
  181 NGRIKQLRSG ALQIESSEET DQGKYECVAT NSAGVRYSSP ANLYVRVRRV APRFSILPMS 240
  241 HEIMPGGNVN ITCVAVGSPM PYVKWMQGAE DLTPEDDMPV GRNVLELTDV KDSANYTCVA 300
  301 MSSLGVIEAV AQITVKSLPK APGTPVVTEN TATSITVTWD SGNPDPVSYY VIEYKSKSQD 360
  361 GPYQIKEDIT TTRYSIGGLS PNSEYEIWVS AVNSIGQGPP SESVVTRTGE QAPASAPRNV 420
  421 QARMLSATTM IVQWEEPVEP NGLIRGYRVY YTMEPEHPVG NWQKHNVDDS LLTTVGSLLE 480
  481 DETYTVRVLA FTSVGDGPLS DPIQVKTQQG VPGQPMNLRA EAKSETSIGL SWSAPRQESV 540
  541 IKYELLFREG DRGREVGRTF DPTTAFVVED LKPNTEYAFR LAARSPQGLG AFTAVVCQRT 600
  601 LQAKPSAPPQ DVKCTSLRST AILILLEALE KWTEYRVTAV AYTEVGPGPE SSPVVVRTDE 660
  661 DVPSAPPRKV EAEALNATAI RVLWRSPTPG RQHGQIRGYQ VHYVRMEGTE ARGPPRIKDI 720
  721 MLADAQEMVI TNLQPETAYS ITVAAYTMKG DGARSKPKVV VTKGAVLGRP TLSVQQTPEG 780
  781 SLLARWEPPA DAAEDPVLGY RLQFGREDAA PATLELAAWE RRFAAPAHKG ATYVFRLAAR 840
  841 GRAGLGEEAS AALSIPEDAP RGFPQILGPA GNVSAGSVIL RWLPPVPAEG NGAIIKYTVS 900
  901 VREAGTPGPA TETELAAAAQ PGAETALTLQ GLRPETAYEL RVRAHTRRGP GPFSPPLRYR 960
  961 LARDPVSPKN FKVKMIMKTS VLLSWEFPDN YNSPTPYKIQ YNGLTLDVDG RTTKKLITHL1020
 1021 KPHTFYNFVL TNRGSSLGGL QQTVTARTAF NMLSGKPSVA PKPDNDGSIV VYLPDGQSPV1080
 1081 TVQNYFIVMV PLRKSRGGQF PILLGSPEDM DLEELIQDLS RLQRRSLRHS RQLEVPRPYI1140
 1141 AARFSILPAV FHPGNQKQYG GFDNRGLEPG HRYVLFVLAV LQKNEPTFAA SPFSDPFQLD1200
 1201 NPDPQPIVDG EEGLIWVIGP VLAVVFIICI VIAILLYKNK PDSKRKDSEP RTKCLLNNAD1260
 1261 LAPHHPKDPV EMRRINFQTP GMLSHPPIPI TDMAEHMERL KANDSLKLSQ EYESIDPGQQ1320
 1321 FTWEHSNLEA NKPKNRYANV IAYDHSRVIL QPLEGIMGSD YINANYVDGY RRQNAYIATQ1380
 1381 GPLPETFGDF WRMVWEQRSA TVVMMTRLEE KSRVKCDQYW PNRGTETYGF IQVTLLDTME1440
 1441 LATFCVRTFS LHKNGSSEKR EVRHFQFTAW PDHGVPEYPT PFLAFLRRVK TCNPPDAGPV1500
 1501 VVHCSAGVGR TGCFIVIDAM LERIRTEKTV DVYGHVTLMR SQRNYMVQTE DQYSFIHEAL1560
 1561 LEAVGCGNTE VPARSLYTYI QKLAQVEPGE HVTGMELEFK RLASSKAHTS RFITASLPCN1620
 1621 KFKNRLVNIL PYESSRVCLQ PIRGVEGSDY INASFIDGYR QQKAYIATQG PLAETTEDFW1680
 1681 RALWENNSTI VVMLTKLREM GREKCHQYWP AERSARYQYF VVDPMAEYNM PQYILREFKV1740
 1741 TDARDGQSRT VRQFQFTDWP EQGAPKSGEG FIDFIGQVHK TKEQFGQDGP ISVHCSAGVG1800
 1801 RTGVFITLSI VLERMRYEGV VDIFQTVKVL RTQRPAMVQT EDEYQFCFQA ALEYLGSFDH1860
 1861 YAT

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