YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|158523347, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFLDRTMSF WAVSRGLTPP SKVVPMLNPN QRQFLEDEVR YREKLKLMAR GDAMEEVYVR  60
   61 KQETVDDPLE LDKHDSFYQT TKSLLVLFQI MGVMPIHRNP PEKNLPRTGY SWGSKQVMWA 120
  121 IFIYSCQTTI VVLVLRERVK KFVTSPDKRF DEAIYNVIFI SLLFTNFLLP VASWRHGPQV 180
  181 AIFKNMWTNY QYKFFKTTGS PIVFPNLYPL TWSLCVFSWL LSIAINLSQY FLQPDFRLWY 240
  241 TFAYYPIIAM LNCFCSLWYI NCNAFGTASR ALSDALQTTI RGEKPAQKLT EYRHLWVDLS 300
  301 HMMQQLGRAY SNMYGMYCLV IFFTTIIATY GSISEIIDHG ATYKEVGLFV IVFYCMGLLY 360
  361 IICNEAHYAS RKVGLDFQTK LLNINLTAVD AATQKEVEML LVAINKNPPI MNLDGYANIN 420
  421 RELITTNISF MATYLVVLLQ FKITEQRRIG QQQA

Type	Start	End	Confidence
Cytoplasmic	1	79	0.72
Transmembrane Helix	80	97	0.53
Non-Cytoplasmic	98	116	0.76
Transmembrane Helix	117	135	0.88
Cytoplasmic	136	152	0.83
Transmembrane Helix	153	174	0.88
Non-Cytoplasmic	175	207	0.78
Transmembrane Helix	208	230	0.84
Cytoplasmic	231	240	0.63
Transmembrane Helix	241	260	0.91
Non-Cytoplasmic	261	312	0.71
Transmembrane Helix	313	333	0.93
Cytoplasmic	334	345	0.60
Transmembrane Helix	346	364	0.91
Non-Cytoplasmic	365	422	0.70
Transmembrane Helix	423	441	0.63
Cytoplasmic	442	454	0.72