YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4726-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.85
Transmembrane Helix	18	38	0.88
Non-Cytoplasmic	39	107	0.86
Transmembrane Helix	108	126	0.83
Cytoplasmic	127	135	0.76
Transmembrane Helix	136	156	0.94
Non-Cytoplasmic	157	162	0.81
Transmembrane Helix	163	186	0.84
Cytoplasmic	187	198	0.74
Transmembrane Helix	199	219	0.94
Non-Cytoplasmic	220	227	0.73
Transmembrane Helix	228	247	0.96
Cytoplasmic	248	288	0.91
Transmembrane Helix	289	310	0.87
Non-Cytoplasmic	311	328	0.83
Transmembrane Helix	329	350	0.88
Cytoplasmic	351	366	0.87
Transmembrane Helix	367	387	0.91
Non-Cytoplasmic	388	393	0.69
Transmembrane Helix	394	414	0.88
Cytoplasmic	415	424	0.65
Transmembrane Helix	425	448	0.87
Non-Cytoplasmic	449	456	0.77
Transmembrane Helix	457	480	0.91
Cytoplasmic	481	512	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDEVPAKGS ILGKLVPARY VLALLGSIGM AIVYGLKVNL SVAMVAMVNH TAIKAHGDGG  60
   61 GHGGHGSVIL SNASQVSLVE ECNPPGGASN VTAKVEDGPF DWSEPLQGTL LSCYFWGYLV 120
  121 SQIPLAHVAE NFSAKWVMLF SVAINVVCTL LTPVFTELHY GGLILMRVLE GVGGGASFPA 180
  181 MHVMIASWAP PTERMVMSTI IYVGTSAGTA LSILLAGVCS AQWGWESVFY VMGALSCIWM 240
  241 LLWVILVQDN PNKQRFISLE ERQMITSSLG TEQKTEHHPA VPWGKVFTSV PFWAILIAHT 300
  301 CSNFGWYMFL IEIPFYMKQV LKFNVASNAA LSALPYFPMI IFSICLGKLL DSLQAKGKIT 360
  361 TTVARKTATS ICTLIPGVCL LVLCYIGCRH YEAVSVMSVG IVAMGSMFSG FLSNHIDIAP 420
  421 NFAGTLVALT NTAATLPGIV VPLFVGFVTK GNQNIGAWRI IFGVTIVLFA LEFLVFVFLG 480
  481 SGSEQPWNKA GTPKDPEAKD EKTPLKELPT KP