YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tkv-PC
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.49
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLQLVALEL QATSGTADGL FEEIALEALT RSEFSANVQP DVEAMAAAAL SGMEMGSGPG  60
   61 SEGYEDADNE KSKTVENARS LTCYCDGSCP DNVSNGTCET RPGGSCFSAV QQLYDETTGM 120
  121 YEEERTYGCM PPEDNGGFLM CKVAAVPHLH GKNIVCCDKE DFCNRDLYPT YTPKLTTPAP 180
  181 DLPVSSESLH TLAVFGSIII SLSVFMLIVA SLCFTYKRRE KLRKQPRLIN SMCNSQLSPL 240
  241 SQLVEQSSGS GSGLPLLVQR TIAKQIQMVR LVGKGRYGEV WLAKWRDERV AVKTFFTTEE 300
  301 ASWFRETEIY QTVLMRHDNI LGFIAADIKG NGSWTQMLLI TDYHEMGSLH DYLSMSVINP 360
  361 QKLQLLAFSL ASGLAHLHDE IFGTPGKPAI AHRDIKSKNI LVKRNGQCAI ADFGLAVKYN 420
  421 SELDVIHIAQ NPRVGTRRYM APEVLSQQLD PKQFEEFKRA DMYSVGLVLW EMTRRCYTPV 480
  481 SGTKTTTCED YALPYHDVVP SDPTFEDMHA VVCVKGFRPP IPSRWQEDDV LATVSKIMQE 540
  541 CWHPNPTVRL TALRVKKTLG RLETDCLIDV PIKIV

Type	Start	End	Confidence
Signal Peptide	1	17	0.49
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	191	0.95
Transmembrane Helix	192	215	0.93
Cytoplasmic	216	575	0.86