YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Nha1-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	217	0.96
Transmembrane Helix	218	237	0.94
Non-Cytoplasmic	238	245	0.69
Transmembrane Helix	246	265	0.87
Cytoplasmic	266	327	0.79
Transmembrane Helix	328	350	0.86
Non-Cytoplasmic	351	355	0.83
Transmembrane Helix	356	378	0.93
Cytoplasmic	379	390	0.85
Transmembrane Helix	391	414	0.88
Non-Cytoplasmic	415	426	0.77
Transmembrane Helix	427	448	0.93
Cytoplasmic	449	458	0.85
Transmembrane Helix	459	477	0.95
Non-Cytoplasmic	478	484	0.78
Transmembrane Helix	485	503	0.85
Cytoplasmic	504	517	0.74
Transmembrane Helix	518	537	0.91
Non-Cytoplasmic	538	545	0.68
Transmembrane Helix	546	570	0.84
Cytoplasmic	571	579	0.81
Transmembrane Helix	580	601	0.66
Non-Cytoplasmic	602	617	0.72
Transmembrane Helix	618	641	0.85
Cytoplasmic	642	708	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATGEPEAR EDPSVGGAPA TITTPTTIIA PTPIPVPSDV PMPNSNGSGN GAGNHRSTIV  60
   61 IESQPKRRVS IISDPPMIGG NGGLGTGYDN PAYEQNPRRK ISQTSTHSHT DIGPARRKSI 120
  121 LKDTAPHDNE SDRVSTHSYE NYRQNALDVL NAKYNGHQMG HNGGGSSNGG ANYVEESWMY 180
  181 NFCLKCRGEE PSASWEPPFW QKIFPYPLCP TFRTVSRLIS IILIGVLIWV TAFVIIGDSA 240
  241 APGGQLFGLV VLTVAANFGG YLISLTTLPR LIGMLLVGIL FQNVGWADID GDFSKVTAHL 300
  301 RKFALTIILT RAGLEMEPEA FKKVYKTILK LGIIPWCVEA VVMAVMSHFL LDLPWIWAFL 360
  361 LGSIIAAVSP AVVVPCLFRL RTKGYGVAKG IPTLVVAVAG VDDALSVAIF GIISTVMFSD 420
  421 KGLAYQIAQA PVCILGGLGF GVVWGSLARI FPEKGDAYVV PLRTLLLFTG GLMAIYGSEE 480
  481 LGFEGAGPLA VVFSAFVSNL FWCKDGWDVE DNPVSTAFEI FWMIFEPILF GLTGATIKIR 540
  541 ELDSHTVSIG AACIFTGAIL RILTTAGIAF GDRLNTKEKF FVGLSWMAKA TVQAALGPVA 600
  601 LKHLGDDATE EERNWANIVQ TICVFSIVLT APLGAIMISV TGTKLLTKTK QPQDLSGWRR 660
  661 SHRPSIRDIS IIDEEEERED PEIPEDKETH DNTLNNAHIP SISYTYNT