YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24582571, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.76
Transmembrane Helix	30	54	0.86
Non-Cytoplasmic	55	114	0.98
Transmembrane Helix	115	137	0.91
Cytoplasmic	138	145	0.95
Transmembrane Helix	146	168	0.90
Non-Cytoplasmic	169	192	0.83
Transmembrane Helix	193	214	0.84
Cytoplasmic	215	225	0.77
Transmembrane Helix	226	251	0.81
Non-Cytoplasmic	252	275	0.89
Transmembrane Helix	276	297	0.91
Cytoplasmic	298	313	0.91
Transmembrane Helix	314	337	0.89
Non-Cytoplasmic	338	344	0.79
Transmembrane Helix	345	365	0.95
Cytoplasmic	366	385	0.95
Transmembrane Helix	386	405	0.96
Non-Cytoplasmic	406	418	0.79
Transmembrane Helix	419	441	0.93
Cytoplasmic	442	490	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIHSYMGQF SSSGFISAFR LSPLFKGMGY VSLFLTITLL IYYTIFAAVP LLFVLNSFRP  60
   61 TLPWSCEGFK SWQNDTIAKW TEEVAKETEN DTYFYITNIH VPSVLYFNEL NDYEISWHLS 120
  121 GLFALVWATI AFIFYKFSEP AKFGKCIRYM VIGTVALLLV CFVRFLFLPG AHLGLKNYMT 180
  181 PSIEEFVVGT SSTFIMALQA FGAGWGSVIT LSSFNGFKTN IMSYSWIISF GQIFIYIMFG 240
  241 MVSFMLEHYF LVINHWVLFL SSASALSSLG WPNLWTFIYY TMLLMAALIT TQIFTILQSL 300
  301 FDEFEQLRAK KQEVTLGLIG GLAVCSLYFC TNHGVLYFAI LSIDAIFSQT LLHLLLLLVV 360
  361 LWVYGRDRFQ KDIKFMLGQP FASWKVFILR FVAPPTLVIC LVLEIKMCLE EHSYSSSVLH 420
  421 FMAIILVGLP ILAIPAYGFY YIHQRPGSIS ELFRATDWYP VEMEYRQQYG ELVQKSEMTH 480
  481 QLFDRTEEVN