YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C1GalTA-PB, C1Ga...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTANSLLGRS ILNEGRSNKR SFVSLIVGLI VGFCLAELFV YSTPERSEFM PYDGHRHGDV  60
   61 NDAHHSHDMM EMSGPEQDVG GHEHVHENST IAERLYSEVR VLCWIMTNPS NHQKKARHVK 120
  121 RTWGKRCNKL IFMSSAKDDE LDAVALPVGE GRNNLWGKTK EAYKYIYEHH INDADWFLKA 180
  181 DDDTYTIVEN MRYMLYPYSP ETPVYFGCKF KPYVKQGYMS GGAGYVLSRE AVRRFVVEAL 240
  241 PNPKLCKSDN SGAEDVEIGK CLQNVNVLAG DSRDSNGRGR FFPFVPEHHL IPSHTDKKFW 300
  301 YWQYIFYKTD EGLDCCSDNA ISFHYVSPNQ MYVLDYLIYH LRPYGIINTP DALPNKLAVG 360
  361 ELMPEIKEQA TESTSDGVSK RSAETKTQ

Type	Start	End	Confidence
Cytoplasmic	1	20	0.83
Transmembrane Helix	21	41	0.83
Non-Cytoplasmic	42	388	0.99