YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr43a-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISQPSIGI FYISKVLALA PYATVRNSKG RVEIGRSWLF TVYSATLTVV MVFLTYRGLL  60
   61 FDANSEIPVR MKSATSKVVT ALDVSVVVMA IVSGVYCGLF SLNDTLELND RLNKIDNTLN 120
  121 AYNNFRRDRW RALGMAAVSL LAISILVGLD VGTWMRIAQD MNIAQSDTEL NVHWYIPFYS 180
  181 LYFILTGLQV NIANTAYGLG RRFGRLNRML SSSFLAENNA TSAIKPQKVS TVKNVSVNRP 240
  241 AMPSALHASL TKLNGETLPS EAAGDKAAAR SLILNVELLK LGYFPAKNKG LLLKSLADSH 300
  301 ESLGKCVHLL SNSFGIAVLF ILVSCLLHLV ATAYFLFLEL LSKRDNGYLW VQMLWICFHF 360
  361 LRLLMVVEPC HLAARESRKT IQIVCEIERK VHEPILAEAV KKFWQQLLVV DADFSACGLC 420
  421 RVNRTILTSF ASAIATYLVI LIQFQRTNG

Type	Start	End	Confidence
Cytoplasmic	1	37	0.69
Transmembrane Helix	38	60	0.90
Non-Cytoplasmic	61	78	0.93
Transmembrane Helix	79	102	0.85
Cytoplasmic	103	131	0.95
Transmembrane Helix	132	154	0.89
Non-Cytoplasmic	155	177	0.91
Transmembrane Helix	178	199	0.91
Cytoplasmic	200	313	0.97
Transmembrane Helix	314	336	0.88
Non-Cytoplasmic	337	347	0.88
Transmembrane Helix	348	366	0.88
Cytoplasmic	367	424	0.92
Transmembrane Helix	425	444	0.78
Non-Cytoplasmic	445	449	0.72