YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8046-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.91
Transmembrane Helix	59	78	0.80
Non-Cytoplasmic	79	129	0.86
Transmembrane Helix	130	151	0.82
Cytoplasmic	152	159	0.85
Transmembrane Helix	160	183	0.85
Non-Cytoplasmic	184	194	0.74
Transmembrane Helix	195	218	0.89
Cytoplasmic	219	229	0.87
Transmembrane Helix	230	251	0.91
Non-Cytoplasmic	252	257	0.82
Transmembrane Helix	258	279	0.95
Cytoplasmic	280	319	0.96
Transmembrane Helix	320	339	0.90
Non-Cytoplasmic	340	362	0.86
Transmembrane Helix	363	383	0.93
Cytoplasmic	384	389	0.91
Transmembrane Helix	390	411	0.90
Non-Cytoplasmic	412	417	0.68
Transmembrane Helix	418	435	0.89
Cytoplasmic	436	450	0.81
Transmembrane Helix	451	474	0.92
Non-Cytoplasmic	475	482	0.89
Transmembrane Helix	483	504	0.93
Cytoplasmic	505	519	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEEPHAHEN LVAKAQRSGD ADPEVASTAS EKQRSSGASA IAVGTEFPGN PQASRPQSLG  60
   61 MYLLEPFILI LLFAYNFSST VLKNEVIYQS CTAGFGYPDS VCQLLGTKNI TNETKRIEEQ 120
  121 VQPYAAQVTL AMRLVECFIP AFCGLFAGSW ADHYGRKPLL MCSFLGYGLQ YLISAAIAYC 180
  181 AMYTQGLVSP WWYVLSIVPL SCLGSSVTYS VAAVCFIADV SGGKVRSYRM IAYELAIYVG 240
  241 LLLGSLGSGY AYEATDAYIV FSISAVCIFT ALFLMALLLP ESLPARNRTL STPTTDTSVV 300
  301 SMLKSLWSTC SKPREHQNRF MLTTIMVVLL LTAFVSDGSN SVFYKFMRIK FHWTVKQFTE 360
  361 YETVGILVPA VAGSGGVLFI WSLRKCTNSA ILWLALVSLL SHCSSSLMKG FALESWQIYV 420
  421 AIGLGVFKSL VNPMCRTMIT NLLPADERGK IFALLGVLQA LSPLISSTLY VAIYTRTLNT 480
  481 EPGIFNVFSA FLFGIGIILL GTVWHKKSRN LVYYEPVFK