YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220959416, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAVKIIMST ETSASETTPL RRSENETPDH KELAQSNSNS RQTTVNSNNN NYSNSVQVRL  60
   61 QEQDRDSDSE QQQHTATITM DTNKRILCRV GLDVLILLCA GFPILLFFLL GEPYKRGFFC 120
  121 DDESLKHPFH DSTVRNWMLY FIGAVIPVGV IFIVEVIISQ NKAKQDNGNA TSRRYVFMNY 180
  181 ELPDWMIECY KKIGIYAFGA VLSQLTTDIA KYSIGRLRPH FIAVCQPQMA DGSTCDDAIN 240
  241 AGKYIQEFTC KGVGSSARML KEMRLSFPSG HSSFTFFAMV YLALYLQARM TWRGSKLLRH 300
  301 LLQFLFIMVA WYTALSRVSD YKHHWSDVLA GSLIGSISAL VVANYVSDLF QKPNTKPYLA 360
  361 RTVQDMNASP AQAITITTN

Type	Start	End	Confidence
Cytoplasmic	1	89	0.98
Transmembrane Helix	90	109	0.95
Non-Cytoplasmic	110	136	0.95
Transmembrane Helix	137	158	0.93
Cytoplasmic	159	266	0.90
Transmembrane Helix	267	288	0.84
Non-Cytoplasmic	289	296	0.74
Transmembrane Helix	297	315	0.92
Cytoplasmic	316	324	0.67
Transmembrane Helix	325	346	0.81
Non-Cytoplasmic	347	379	0.70