YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21627378, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVKLVMFNT IRDDHSASNA PRNTAYRMGR ALVGGFDSIR SGPVRFICAP WEMVLASDKS  60
   61 HLKEASDRRV FKMLGVHSLI SNCNSVCVQK FKRFGINMQR VASVDHSNGS RRTRSRRPGP 120
  121 RITGYSSVRH AIHSKMEEIN LGILHADIAS ACFQLLFIAA LLLSLAQARP QVRGQAPGEP 180
  181 IPIIRQEQEV NFDGSYKYLY ETGNGINAEE EGYLKNPGTD NAGQVAQGSF SYTSPEGIPI 240
  241 RITYLADENG FQPQGDHLPT PPPIPPAIQK ALAYLATAPP PPQEQPGGFN NRRETWTTSE 300
  301 YRGSTSKKFQ QPAVPGGERC NASPLNRFYR

Type	Start	End	Confidence
Cytoplasmic	1	142	0.68
Transmembrane Helix	143	163	0.72
Non-Cytoplasmic	164	330	0.90