YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220950450, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTNSVSPLP PMEEAMDRVS EKSPPGTPNG IEMPPPPDEK RYEEDPDNAW NCCSWCEYLL  60
   61 IVILSTILLV GVLVLTLFWV MFYRDGFAWS ESPKQQFNLH PILMIAGFVT LSGFSILIYR 120
  121 LCRCVKQIYV KLIHMFFHAV AIPCIALGFI SVFASHDALH KVNFYSLHSW LGFVTMGMFV 180
  181 LQFVIGFFSF LVMLCCENKT YSCRSAMVPI HASLGLANFW LAIATSVTGL IEKERETVNE 240
  241 AGVSSENKLV EHYITSAIGV TLIFIGIIVT FAVRRSNAPA SAKVYVTERI

Type	Start	End	Confidence
Cytoplasmic	1	57	0.99
Transmembrane Helix	58	81	0.92
Non-Cytoplasmic	82	98	0.93
Transmembrane Helix	99	122	0.88
Cytoplasmic	123	133	0.85
Transmembrane Helix	134	154	0.94
Non-Cytoplasmic	155	170	0.86
Transmembrane Helix	171	194	0.89
Cytoplasmic	195	206	0.78
Transmembrane Helix	207	228	0.83
Non-Cytoplasmic	229	251	0.91
Transmembrane Helix	252	273	0.94
Cytoplasmic	274	290	0.97