YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8468-PA, CG846...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.91
Transmembrane Helix	48	69	0.91
Non-Cytoplasmic	70	85	0.73
Transmembrane Helix	86	106	0.92
Cytoplasmic	107	116	0.67
Transmembrane Helix	117	136	0.95
Non-Cytoplasmic	137	142	0.76
Transmembrane Helix	143	167	0.90
Cytoplasmic	168	174	0.75
Transmembrane Helix	175	195	0.93
Non-Cytoplasmic	196	204	0.69
Transmembrane Helix	205	224	0.94
Cytoplasmic	225	481	0.93
Transmembrane Helix	482	504	0.85
Non-Cytoplasmic	505	516	0.88
Transmembrane Helix	517	537	0.89
Cytoplasmic	538	547	0.88
Transmembrane Helix	548	569	0.94
Non-Cytoplasmic	570	576	0.75
Transmembrane Helix	577	596	0.96
Cytoplasmic	597	607	0.83
Transmembrane Helix	608	631	0.88
Non-Cytoplasmic	632	638	0.85
Transmembrane Helix	639	661	0.92
Cytoplasmic	662	678	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQQTKSQD ELASKGLVSK QPENIKEENE GEEEIEEAAV VVPPDSGWAW VVMVASFLCC  60
   61 TVIDGIVFCS GLIQEQLMAE FGVSKAYVAF VSSLLSGCYL MAGPFVSAMA NRFGFRPVTI 120
  121 TGAIFAAICF GLSYFATSVE YLFLIYGVLG GIGFCMVYIP AVVIIGFYFE KWRALATGVA 180
  181 MCGSGVGTFV FAPLTKILLK SGWRYTLAIQ GIIVLSCALF GLAFRPIQPI TLSVTNEEGD 240
  241 EQEKKKLNGH GNTVAPTPQL HQAAFTKPLP EGRFAYSMPN SAHNTYMGAS QRNHYPTAQE 300
  301 IFKGMNLERR PSGTAQGSKG TELKQLRKSQ PTTPNGDPQQ LTFNLHKELT TVGENEEEAE 360
  361 NDNLLETEAK PVTIQARRHT VSGRRPQDIG KRSAAAAHEA HHGQSHSSSR PMYRDDIFFS 420
  421 GSLTRIPQYQ SQTSLAYHMS VTRLPTKQDM LEDRQKGCRI CPEAVRRTLS TMLDTTLLKS 480
  481 PAFMCLAFSG FLTMMGFFVP FTFLVDRAKA AGMDEQAAYG VLSGIGVVNT FARIVCGSLS 540
  541 SFPAVKPLWL NNFALTAGGI ATICSGIVIN TATQWTFALF FGICIACFSA LRSLIAVELI 600
  601 GLEKLTNAYG FLMLFQGLAA TFGSPIAGGL YVMTGSYNAA FYFAGGLILL SAFLCYPLTW 660
  661 VSRWEERRNE KLTPLPAA