YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8389-PA, CG8389-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.94
Transmembrane Helix	12	33	0.89
Non-Cytoplasmic	34	51	0.85
Transmembrane Helix	52	73	0.90
Cytoplasmic	74	83	0.79
Transmembrane Helix	84	103	0.94
Non-Cytoplasmic	104	108	0.74
Transmembrane Helix	109	131	0.88
Cytoplasmic	132	141	0.76
Transmembrane Helix	142	161	0.95
Non-Cytoplasmic	162	171	0.75
Transmembrane Helix	172	191	0.95
Cytoplasmic	192	261	0.96
Transmembrane Helix	262	284	0.89
Non-Cytoplasmic	285	297	0.80
Transmembrane Helix	298	318	0.94
Cytoplasmic	319	326	0.91
Transmembrane Helix	327	348	0.91
Non-Cytoplasmic	349	354	0.80
Transmembrane Helix	355	376	0.88
Cytoplasmic	377	386	0.91
Transmembrane Helix	387	410	0.88
Non-Cytoplasmic	411	419	0.76
Transmembrane Helix	420	439	0.95
Cytoplasmic	440	471	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVQSSRVVP DGGYGWIVVA AVALINMTNQ SILSVFGQLF VGELQKMQED TFTAALITNL  60
   61 NSLALNFSGL FIGPAIKSFK PRNVAATGCI LVALGLALCA FASESWHFIL GYSFFVGFGL 120
  121 GLISPSTFMA INSYFTTKRG RAVGVSLAGA GLGQVLIPHL VRYLLDNHGF RYAVLSMSSL 180
  181 SLFGLFGAAF LKPLNPPAKH NNRKHIRLLT EADGEKTSPL QVVIVPTNQS KIERSPPNVD 240
  241 TLCSRMGQRL VQAMDLELLK DLVFWSIIVG MALVYTATIN FTMIFPGFLG QTAQLNSQMV 300
  301 AFCMSLVAGA DIVFRLLLPI VTDHLRIPYR VVFLIGIVGL FVARCVLAEN QTLPVIITMS 360
  361 VLTGMMKSAT VINNNLTISA HCRSEKLAGG LGLSMMSKGV IVITVGQLLG WVRDYADSYL 420
  421 ICLYAQGVIL LVVVLVWTPE ILYRHRRQRC ATNKSMETQS IDAAEVAKLN S