YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8399-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	30	0.91
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	407	0.99
Transmembrane Helix	408	431	0.89
Cytoplasmic	432	446	0.99
Transmembrane Helix	447	469	0.92
Non-Cytoplasmic	470	476	0.85
Transmembrane Helix	477	500	0.89
Cytoplasmic	501	513	0.90
Transmembrane Helix	514	535	0.91
Non-Cytoplasmic	536	547	0.85
Transmembrane Helix	548	569	0.92
Cytoplasmic	570	615	0.97
Transmembrane Helix	616	638	0.92
Non-Cytoplasmic	639	647	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQALTMRSW LATLVTALLA VAIWPDPGQS LPQGAPETVC DTMLPFHSGG SVLPQNSVSP  60
   61 FSVETSSSTL GQGQTLRVDL TGVPAGLSFG GYMIQARNRN PPHQIIGQFG PARDGTIKLM 120
  121 NCENSVNNSA THSNAGPKQQ VILEWQSPVD FLGQVVFNAT IAQSYNEFWV GVPSQPVQIV 180
  181 RRDLSAAPPL PTQSPSAPAG TTRAPYVPPS YVAPNNVVAV SSDPIYNGCG QSKNCFGFPD 240
  241 GCVATKSCTS ITVVTVRGDV FEFEIQSGKG TNAAYVAVGL SDDAKMGDDL TTECVPENGR 300
  301 VNLYSSLTSA SPYSAVRSNV NQNSARLLDA SIVDGVIYCR VQRDAVTNVQ GRTFDLRNGK 360
  361 YHLLVASGSS LKENSVGYHD IGRLPSAQPI NLAEVQDLSG SSRLLIQLHG AFMIAAWIGT 420
  421 TSLGIIFARY FKQTWVGSQS CGTDQWFAWH RLLMVTTWSL TVAAYVLIWV ELKQAVWHAH 480
  481 SIIGLITVIL CFIQPIGALF RPGPNDKKRP YFNWGHWLGG NLAHILGIVT IFFSVKLPKA 540
  541 ELPEWMDWIL VSFVVVHVLV HLIFSIGGMA SERHLSQRAN TFQMGDMSHH QQHAMRNGMS 600
  601 MERKMDAPYA GMRKGLLGVY GVVLILFVTV LILLVVLAPI EQFLGKS