YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr58b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHPKLGRVM NVVYYHSVVF ALMSTTLRIR SCRKCLRLEK VSRTYTIYSF FVGIFLFLNL  60
   61 YFMVPRIMED GYMKYNIVLQ WNFFVMLFLR AIAVVSCYGT LWLKRHKIIQ LYKYSLIYWK 120
  121 RFGHITRAIV DKKELLDLQE SLARIMIRKI ILLYSAFLCS TVLQYQLLSV INPQIFLAFC 180
  181 ARLTHFLHFL CVKMGFFGVL VLLNHQFLVI HLAINALHGR KARKKWKALR SVAAMHLKTL 240
  241 RLARRIFDMF DIANATVFIN MFMTAINILY HAVQYSNSSI KSNGWGILFG NGLIVFNFWG 300
  301 TMALMEMLDS VVTSCNNTGQ QLRQLSDLPK VGPKMQRELD VFTMQLRQNR LVYKICGIVE 360
  361 LDKPACLSYI GSILSNVIIL MQFDLRRQRQ PINDRQYLIH LMKNKTKV

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.88
Transmembrane Helix	12	32	0.84
Cytoplasmic	33	43	0.95
Transmembrane Helix	44	64	0.93
Non-Cytoplasmic	65	82	0.84
Transmembrane Helix	83	103	0.93
Cytoplasmic	104	149	0.98
Transmembrane Helix	150	168	0.95
Non-Cytoplasmic	169	193	0.81
Transmembrane Helix	194	217	0.83
Cytoplasmic	218	249	0.92
Transmembrane Helix	250	272	0.88
Non-Cytoplasmic	273	283	0.79
Transmembrane Helix	284	303	0.87
Cytoplasmic	304	408	0.85