YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20454944, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPSGEKVVK GHGQGNSGHS LSGMANYYRR KKGDAVFLNA KPLNSANAQA YLYGVRKYSI  60
   61 GLAERLDADY EAPPLDRKKS SDSTASNNPE FKPSVFYRNI DPINWFLRII GVLPIVRHGP 120
  121 ARAKFEMNSA SFIYSVVFFV LLACYVGYVA NNRIHIVRSL SGPFEEAVIA YLFLVNILPI 180
  181 MIIPILWYEA RKIAKLFNDW DDFEVLYYQI SGHSLPLKLR QKAVYIAIVL PILSVLSVVI 240
  241 THVTMSDLNI NQVVPYCILD NLTAMLGAWW FLICEAMSIT AHLLAERFQK ALKHIGPAAM 300
  301 VADYRVLWLR LSKLTRDTGN ALCYTFVFMS LYLFFIITLS IYGLMSQLSE GFGIKDIGLT 360
  361 ITALWNIGLL FYICDEAHYA SVNVRTNFQK KLLMVELNWM NSDAQTEINM FLRATEMNPS 420
  421 TINCGGFFDV NRTLFKGLLT TMVTYLVVLL QFQISIPTDK GDSEGANNIT VVDFVMDSLD 480
  481 NDMSLMGAST LSTTTVGTTL PPPIMKLKGR KG

Type	Start	End	Confidence
Cytoplasmic	1	129	0.94
Transmembrane Helix	130	149	0.95
Non-Cytoplasmic	150	166	0.93
Transmembrane Helix	167	188	0.94
Cytoplasmic	189	222	0.98
Transmembrane Helix	223	245	0.93
Non-Cytoplasmic	246	264	0.86
Transmembrane Helix	265	285	0.88
Cytoplasmic	286	320	0.95
Transmembrane Helix	321	344	0.90
Non-Cytoplasmic	345	356	0.75
Transmembrane Helix	357	374	0.80
Cytoplasmic	375	436	0.82
Transmembrane Helix	437	455	0.61
Non-Cytoplasmic	456	483	0.71
Transmembrane Helix	484	504	0.54
Cytoplasmic	505	512	0.76