YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Teh2-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.51
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSSTLTTT TSMPASPTLS AQTLSASKIS LNSSRCGSAG SGCGSASGSM RSACQSPVRP  60
   61 GSGCVDAIKA KREEIEMDTL LEKAKFYTSV CLGTTAILSV FTFLFLIPFV VDPAISTIIA 120
  121 DYDPVPVTCI VIDHIYAEGI KNCSWSSCRE GCTSSLTKCH QLFVNYTRIP FSEWERNPRD 180
  181 LDTVNWDVSY TKFLINSEGC GYPPTTNCSI FARQYGFSHI GEPFPCFYSR AYPEVVIGRY 240
  241 SWENNLYHLI LSLIIPNVLF AISIGVLSYW YCPCCEKACN KSSRVYAEKF PTKEDKLLCH 300
  301 SDEDDDMEY

Type	Start	End	Confidence
Signal Peptide	1	21	0.83
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	248	0.89
Transmembrane Helix	249	272	0.57
Cytoplasmic	273	309	0.59