YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Teh3-PA
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKKVPVED LVVPPQDTRI CGTICICQMT LVLSSVALVY LTVAIYMPST RAFKSGIDPT  60
   61 PVMCTTTRAV NKDNCEWGSC GEWCLSKTSG ACIQIYVNLR SNGSNLIFQN CTNSANKTCY 120
  121 GIDQDRADKA RCINDECKNL TGTFNCTAGQ CLNITDAFEC IFHNSDAPVK CSGRRGKINC 180
  181 MDISGLYSCS RGTCRKIRTP YNCDRRCVDI PTRNKNVVVL SGDKVYLSQC QNAINAETLE 240
  241 EVWNESSENV AMTSCYFIRH TSDQVDAVDC INGSTLETNM LSDLTNFTYL SHLHVSVATP 300
  301 VPEIAPPDVD LTISNESKLM INLEGCVNTL MDECKEFLKD FGRDGSDHNA RARFPCFYSP 360
  361 GKKDVVVARF DLEVTYRQFV FASVVPSVLF VVSCSILIMC QTTVYVGDDA KMRFKGCVDT 420
  421 ETVLNKNNVG APTNGDMGGG GGDEVMAL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.73
Transmembrane Helix	21	44	0.69
Non-Cytoplasmic	45	383	0.95
Transmembrane Helix	384	405	0.61
Cytoplasmic	406	448	0.63