YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8177-PD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	625	0.99
Transmembrane Helix	626	648	0.90
Cytoplasmic	649	659	0.83
Transmembrane Helix	660	681	0.85
Non-Cytoplasmic	682	710	0.81
Transmembrane Helix	711	732	0.89
Cytoplasmic	733	741	0.76
Transmembrane Helix	742	762	0.85
Non-Cytoplasmic	763	825	0.91
Transmembrane Helix	826	847	0.92
Cytoplasmic	848	860	0.93
Transmembrane Helix	861	882	0.88
Non-Cytoplasmic	883	913	0.91
Transmembrane Helix	914	933	0.96
Cytoplasmic	934	953	0.93
Transmembrane Helix	954	974	0.88
Non-Cytoplasmic	975	979	0.63
Transmembrane Helix	980	999	0.68
Cytoplasmic	1000	1013	0.78
Transmembrane Helix	1014	1033	0.86
Non-Cytoplasmic	1034	1038	0.60
Transmembrane Helix	1039	1060	0.86
Cytoplasmic	1061	1083	0.86
Transmembrane Helix	1084	1103	0.89
Non-Cytoplasmic	1104	1108	0.72
Transmembrane Helix	1109	1127	0.59
Cytoplasmic	1128	1161	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKVFAGNSA RKDKFDVNTF QDNSQLPIGS RKKNSIRTND LNIEEDSEYE SQTEPLNNAQ  60
   61 NYDDIPEDFP LVSERAGHGD HSDNSVDEKH VQFGGKKKIP PSLSYDEQPT DQSHERKRRR 120
  121 SRHQYYRQRK FSHQDSVEPK NKLEENGDAG ARRISVQPED TALEEADLNE LRSHRSDDPR 180
  181 ALRRHKIHHS SIKLRELPQI TISPFTNKKP EVDHSPHEIF VQLDELTGVG EDREWKETAR 240
  241 WIKYEEDVEE GSDRWGKPHV ASLSFHSLLN LRRCLETGVV LLDLNEKDLP AVAYRVVEQM 300
  301 VIEDLIDIND KPSVMRSLLL RHRHVNEHQG VLPFTKRKYN SYTSLQNLSG TDDKKIKIMP 360
  361 AAEIGGSKRS NELKIDMKDD MYSSSQEDLK KLQNDTILKR IPAGAEATTV LVGAVEFLEQ 420
  421 PTIAFVRLSE GVLMPTLTEV PVPVRFMFVL LGPRNFDLDY HEVGRSISTL MANEHFHSIA 480
  481 YKADDRKDLL SAINEFLDDS IVLPPGNWDR HDLLPFEELK AKKDWIRTRK IKALQVKRDS 540
  541 EMIKIGKDEE KALLEKQTLG AIGFTIGGGD GGGDGDSDDD NGRKKKKPSP LEKTGRLWGG 600
  601 LRNDLKRRMP MYKSDILDGL NTETLAATIF MYFACLSTAI TFGGLVSAKT NSWIGISETL 660
  661 ISCSLVGIVF HCLSCQPLVI IGTTGPLLLF DEALMVFCTQ HEFDFLSLRV YVGVWLIIIA 720
  721 LTVSAFEGSV YVRLLTRFTQ EIFSALITLI YIVETFMKLI SIYRENPLLS DYNLPPPTLV 780
  781 AHEHATNESL LNATASVTTN ITQMVMNIST TAMPIGPPPL PKNQPNTALF CTILTLATFV 840
  841 VAYYLKLFRN SHFLGRNARR ALGDFGVPIS IAIFVLVDYL VPAVYTEKLV VPEGLSPSDP 900
  901 SKRGWYIGFD TSSTWIPFAC VIPALLVYIL IFMESQISEL IVDKPDRGLK KGSGLHWDIV 960
  961 LLCLLNCACG IFGMPWHCAA TVRSVTHVSS VTIMSRTHAP GESPRIVDVK EQRLSGFFVC1020
 1021 LMIGLSVLMA PLLRLIPMAV LFGVFLYMGV ASMSGVQLFE RIRLYFMPVK HYPPTSYVKR1080
 1081 LRPWKLHLFT TIQVLCLVLL WSVKSSQFSL AFPFFLIMMV PIRQNLTKLY KPEEMQALDG1140
 1141 SEMKKNDDDE PDFYEQTNIP A