YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	blot-PC, FBpp0308930
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	48	0.98
Transmembrane Helix	49	69	0.88
Non-Cytoplasmic	70	85	0.80
Transmembrane Helix	86	109	0.86
Cytoplasmic	110	130	0.85
Transmembrane Helix	131	151	0.93
Non-Cytoplasmic	152	198	0.93
Transmembrane Helix	199	219	0.94
Cytoplasmic	220	227	0.85
Transmembrane Helix	228	248	0.93
Non-Cytoplasmic	249	276	0.90
Transmembrane Helix	277	297	0.89
Cytoplasmic	298	308	0.81
Transmembrane Helix	309	331	0.91
Non-Cytoplasmic	332	372	0.95
Transmembrane Helix	373	392	0.96
Cytoplasmic	393	402	0.83
Transmembrane Helix	403	424	0.94
Non-Cytoplasmic	425	431	0.88
Transmembrane Helix	432	453	0.94
Cytoplasmic	454	472	0.91
Transmembrane Helix	473	493	0.94
Non-Cytoplasmic	494	507	0.91
Transmembrane Helix	508	527	0.96
Cytoplasmic	528	809	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQENDKFFDT YKQYKVCPKM EIPTTKYLAD YLYVVHEDVP FRYYRKTKCS VFRGLVLCLC  60
   61 LNLSYANVVR FPRELDRYGS AYLVPYVVLL FLVGLPMVLL EISVGQFLGQ GAAHTWRASP 120
  121 IFKGACMISR FASWLSAIWV SLQAVLALAY IGMFASNDLP FRECAGPVKL RLSGYLLTGT 180
  181 SGQECLQLTF LTPFWRNPLY FGLLAAGLIG LWIVVMLCTH NAKILRRSIF VFGLVGLVLL 240
  241 CTLTGWEVRN SFSRHYFPEL WGFDSNLLAE SNIWFNALMQ VLFSVNCGFG ALPMITGKFL 300
  301 YKGDAVRTSV VYLCFNLLIN AIAVTLFMVQ FDLSSNGFQN MEELKPLTAI YDRVLNGSRE 360
  361 GDSHLLQHLV PSLIYALIIL SAMVSITVAV YTSTRLVPRR PNYVICLIGL VVAVISFAAP 420
  421 KFLIARVLDS RLVGTMVVTA LVFELIAITW IYGAKNIYTD LEFSIGRPIF RVWMWLWVIC 480
  481 PAILTGILVW WCADDDQYDL LAEYLPRWAP ILFVLAVIVI IACVQIFRQV EYNFFGMICE 540
  541 ASKPAKEWGP ADPLARHSWK QWRSVCQDTG RRDFTLRRRG TRDYTHSIKK GQYSSATKYG 600
  601 VQNGGQTQTP MHQQHWKSST PGNSSPNYSG SMFGDSAIEE DISVDKFPGI TQQQYVPFQA 660
  661 SDTKQSRYSQ RIRQTAQPQT QTQMRPPRES VEKHREVVYI RRLSDGGTGT GHATRIEISP 720
  721 SNESITYGNG KSNNNYSSAM SRNPLGRSTG CLAAPAQPPP PSVHVKRSAS SVVNVNSHKL 780
  781 PPPATSGGAA DHICWRKFNV NPEEYSTEL