YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220956544, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHNNQPSPG DDQLGPPKAD FSAPPPYEAN VGHGQQVALP AQMPPLALAT PDPSQIPIQM  60
   61 QVQLPSQADL MNAQLPPEIH GKLPTYEEVQ MEKSLNGELP PAFLTLPSSQ QLPPPPNPLL 120
  121 PPNPLRDGAA AVRSAQPALT FIAIDASDPE NSLSTTDNLL GTDIMFITAF IVAFLFNWIG 180
  181 FLMLTCFCHT IAARYGALSG FGLSLAKWTL IVKHSTDLAS HENSWLWWLI CAFGFLISIR 240
  241 ALIQYVSIKR SWRLLSASAQ ERLLFFY

Type	Start	End	Confidence
Non-Cytoplasmic	1	159	0.49
Transmembrane Helix	160	184	0.75
Cytoplasmic	185	190	0.43
Transmembrane Helix	191	211	0.64
Non-Cytoplasmic	212	224	0.82
Transmembrane Helix	225	244	0.96
Cytoplasmic	245	267	0.83