YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	croc-PA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTLFSDQNS FTRHYAQTAA GYGSASAVAA ASSASAAAAA HYAYDQYSRY PYSASAYGLG  60
   61 APHQNKEIVK PPYSYIALIA MAIQNAADKK VTLNGIYQYI MERFPYYRDN KQGWQNSIRH 120
  121 NLSLNECFVK VARDDKKPGK GSYWTLDPDS YNMFDNGSFL RRRRRFKKKD VMREKEEAIK 180
  181 RQAMMNEKLA EMKPLKLMTN GILEAKHMAA HAAHFKKEPL MDLGCLSGKE VSHAAMLNSC 240
  241 HDSLAQMNHL AGGGVEHPGF TVDSLMNVYN PRIHHSAYPY HLNEDNLATV ASSQMHHVHH 300
  301 AAAAHHAQQL QRHVAHVAHP LTPGGQGAGG QSSGHSPTTI STPHGPAHGG WYTPETPPSE 360
  361 PVPHNGQQGT PTHPGHNNNN SSSVLNHNGV GNGGGGGGGG GGGSSSVLTS SPTSALGFRD 420
  421 MIFEQNQSCQ LDTGSPTGSL QSASPPASAS VAAASAAAAA AVISSHHHHH HHHAALSGNL 480
  481 GQLGQLSNLS HYRPHVGHYQ EYGIKYGV

Type	Start	End	Confidence
Signal Peptide	1	38	0.89
N-region	1	29
H-region	30	35
C-region	36	38
Cleavage Site	38	39
Non-Cytoplasmic	39	508	0.94