YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG11425-PA
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFNLSLRPP IRLLVDLVLL GLLIVLVENF RRLWGPPTKR GFFCDDESLM YPYHENTVSP  60
   61 TLLHWLGLYL PLISLVVLES FLSHRKDMAP WPTLWPVYNT VRWFLYGYVS NDLLKGIGKQ 120
  121 ALGRLRPHFF AVCSPHFPDG SSCLDESHRG ALKYHTDYEC RPNLSQATEE MIRDVNVSFP 180
  181 SGHSAMAFYG LVFVALHLRR RRWPLRGSLL SPVLQLACVA LAWFVAISRV IDYKHHWSDV 240
  241 AAGSLLGAGS ALAVTRAAAS EELQWRCQDS LASAKQEAAV VDVADVKGGQ QMPHDLSLVT 300
  301 CHISN

Type	Start	End	Confidence
Cytoplasmic	1	10	0.84
Transmembrane Helix	11	30	0.86
Non-Cytoplasmic	31	60	0.88
Transmembrane Helix	61	82	0.87
Cytoplasmic	83	206	0.65
Transmembrane Helix	207	227	0.93
Non-Cytoplasmic	228	236	0.73
Transmembrane Helix	237	258	0.83
Cytoplasmic	259	305	0.90