YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr85a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSLIEAQLL GGKLVNRVMA SLRRIIQRSL GYFCALNGIL DFNTDIGTGN LRRYRVLFMY  60
   61 RLLHNFAVIS LTLKFLFDFT DHFKYIESST LITVNFFTYF TLVFFALLSS MGSCYQWQNR 120
  121 ILAVLKELKH QRDLSRHMGY RVPRSKQNSI DYLLFALTVL LILRLSIHLA TFTLSARMGF 180
  181 NHPCNCFLPE CMIFSMNYLL FAILAEITRC WWSLQSGLKM VLLNRQLSTV AFNLWEIERL 240
  241 HTRFQCLIDL TSEVCSIFRY VTLAYMARNL WSGIVAGYLL VRFVIGNGLQ DVELVYLVFS 300
  301 FITCIQPLML SLLVNSMTST TGSLVEVTRD ILKISHKKSV NLERSIEWLS LQLTWQHTHV 360
  361 TIFGVFRINR SLAFRSASLI LVHVLYMVQS DYISITN

Type	Start	End	Confidence
Cytoplasmic	1	56	0.96
Transmembrane Helix	57	77	0.88
Non-Cytoplasmic	78	95	0.79
Transmembrane Helix	96	115	0.90
Cytoplasmic	116	149	0.94
Transmembrane Helix	150	172	0.89
Non-Cytoplasmic	173	190	0.81
Transmembrane Helix	191	212	0.81
Cytoplasmic	213	266	0.92
Transmembrane Helix	267	286	0.88
Non-Cytoplasmic	287	293	0.81
Transmembrane Helix	294	314	0.89
Cytoplasmic	315	371	0.90
Transmembrane Helix	372	390	0.64
Non-Cytoplasmic	391	397	0.56