YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mthl11-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.57
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.57
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	229	0.99
Transmembrane Helix	230	250	0.93
Cytoplasmic	251	260	0.87
Transmembrane Helix	261	283	0.93
Non-Cytoplasmic	284	294	0.83
Transmembrane Helix	295	316	0.92
Cytoplasmic	317	334	0.96
Transmembrane Helix	335	356	0.94
Non-Cytoplasmic	357	387	0.92
Transmembrane Helix	388	409	0.90
Cytoplasmic	410	439	0.94
Transmembrane Helix	440	461	0.94
Non-Cytoplasmic	462	471	0.88
Transmembrane Helix	472	493	0.86
Cytoplasmic	494	510	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMFRVEYLL LGILVIGVRS RDIPNCDFFD TVQLRESEKL CNGSYRYEDV VIPAKLTGKY  60
   61 DYEIDYDGDR VSVPKHIRGC VCKLKTCIRF CCHHKKLMAG NLCSQDVYEN LTYEYTLDIT 120
  121 QLNGSVIKKH VLNDMVVQQD LPLPCERHYS LDAETSTYDM WSLYENGSLF RHFDQRYLSK 180
  181 QEFCLQPNPT STGKNYSLIV AFNCIQKPSM KMAYGRFECV RKSRLSNASI PVKFSSVFFM 240
  241 VITIAAYLWL PKFRSLHGKC CNLYFICLAI TFLLNVISLF GIFELKTPIC YLTGYAGYFT 300
  301 VMATFLWLSV ISFDVWRRFA MRKFQVFYKN KRSSFFNYNI IVWSSAGLLT CIIFLVDQFV 360
  361 ETNLDNPYNP AVGVFSCWIF TNGWSATFYF YAPLAILIIL NCASFFLTTR YIYVENKQNQ 420
  421 KVLNNSEPQK LSRNHANYRI YFRLFIIMGG SWFLEIIAFI CEMENMWKPL IILNDYINCS 480
  481 QGIIIFVATF CNHEMFRLIR KRWVFCDSTP