YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ho-PA
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASEETIAD SQVSENVEDV EFVDMAFTKE LRKATKDVHN LTDVLVNAKI ALALSDDEVW  60
   61 YDGLLAFYEL YKFFETHLPE RLLPKEFHRT AAFERDFAYF YGSDWRKDYE IRPAVQKYLE 120
  121 HLEKIAAQNE LLLFAYSYQM YMALMSGGQM LQKKRMIARK MWIFSKNDDE EQQKQADKEA 180
  181 ELATARAADG SVDKDDLEAR PMPAQVTICP PGCEATYFPE KISVLKAKLR RVFNNHYGAF 240
  241 DDDLRAAFIE ESRNVFRLNI EVVRTIKGVN RANLRKLALA LIFVSSIVVA VKFALK

Type	Start	End	Confidence
Cytoplasmic	1	273	0.58
Transmembrane Helix	274	295	0.76
Non-Cytoplasmic	296	296	0.86