YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Cyp313a3-PA
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTFQLLLAV GVCFWIYFLW SRRRLYMMHF KIPGPMGLPI LGIAFEYLIT YKRKMSIRTK  60
   61 YMDIYGSTCL VWVGPTPFVI TRDPKIAEEI FLSPECLNRS SIFSKPVNSC TGDGLLSLEA 120
  121 SKWVDRRKNL NPAFKQNVLL SFLPIFNSEA KTLVAFLDSL VGQGEKKVRD DIVRWSFRIA 180
  181 TQTTVGTDVK KDASFKNDSV LKSYETFMKI IVMNVLLPFT HNKIFSTLGG FETQKALAKS 240
  241 NVNKMIGTIV DKKLMTKPES GSQPEITSVI NKAIELHRNG EMSREEVQSE CCSFVVAAFE 300
  301 TTGDTVYHAL ILLAMFPEHQ DTVYQELKEL FPVAGDFEVT YDDLQRMVFL ERVVNETLRL 360
  361 IPSVPFTPRE TIRDFRLSSG VVIPKGVGIG IDIFATHRNR DHWGTDPSSF NPDHFLPDNV 420
  421 RDRHPYAYIP FSKGRRNCIG WKYGLMSSKL ALSKILRNCK VSTSFRYEDL EFVDNIGMEL 480
  481 AQSPGLEFHR RT

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.59
Transmembrane Helix	4	21	0.79
Cytoplasmic	22	29	0.52
Transmembrane Helix	30	50	0.72
Non-Cytoplasmic	51	492	0.87