YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21357383, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.62
Transmembrane Helix	11	25	0.29
Non-Cytoplasmic	26	37	0.40
Transmembrane Helix	38	61	0.75
Cytoplasmic	62	151	0.59
Transmembrane Helix	152	172	0.93
Non-Cytoplasmic	173	178	0.80
Transmembrane Helix	179	201	0.90
Cytoplasmic	202	210	0.91
Transmembrane Helix	211	232	0.92
Non-Cytoplasmic	233	240	0.84
Transmembrane Helix	241	262	0.94
Cytoplasmic	263	305	0.89
Transmembrane Helix	306	325	0.82
Non-Cytoplasmic	326	345	0.83
Transmembrane Helix	346	368	0.84
Cytoplasmic	369	381	0.85
Transmembrane Helix	382	401	0.96
Non-Cytoplasmic	402	406	0.81
Transmembrane Helix	407	428	0.84
Cytoplasmic	429	437	0.56
Transmembrane Helix	438	462	0.78
Non-Cytoplasmic	463	474	0.77
Transmembrane Helix	475	499	0.87
Cytoplasmic	500	521	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCWRLCLLHR YAMSSMSWTL PRLSQSSAST AHGLVGSVRL TYAICAFLAT CLHAAMRNML  60
   61 GMIILKMVMP RPEDALVVPA GLSRLTEGNV TSTGRCGSPR VVFNPQIQET QSGDLPWTRN 120
  121 QELTFPGVYY YGYVVSISLS GYLADRCSSK RLFIVSLIFE AVAYILLPAM AHSSFEAGVV 180
  181 DLVICGLLAG CGNPAMYKLF VTWAHPTERT ALLSFAYSGL LMGSMLVYPV ASYLSNFGWE 240
  241 LSFYVVGGVG LSFGIACCFL VYDTVEQHPR ISNEEVDYLR QGKSQLGQQR QPVVTIPWKS 300
  301 LLAAPPVYAF ILTHMFHTYT FLVIVQLMPR FMREAMEFDL REVGFLSAAP YLGGICSKVM 360
  361 CILGGSYVER RVGPDQNCVR RMLYGICSIL TTSLIGVIIL ANCDDKILVL VMFAFMMATT 420
  421 DMGFSGYWPT LLYFAPSFAG LLSGLANGMA HLSGFLAPHL VAALVHTGSK DEWNVVLMTL 480
  481 IVFNTMAMLV FAFCSSTNLQ PWDPRSRMEK TASPSAQESN S