YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG11857-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNEDSSAAG GGGVKKFFQR LSQTYQSALD RSTPHTRMRW VFAGFLLLLF VLRIFIYQGW  60
   61 YIVCYALGIY HLNLFIAFLT PKIDPEFDPY SQDDEDEGPN LPTRSNEEFR PFIRRLPEFK 120
  121 FWLSVAKSTL IGLICTFFDF FNVPVFWPIL VMYFITLFCI TMKRQIKHMI KYKYLPFTRN 180
  181 KPRYQRVNDL AGSGPGSVAG NSK

Type	Start	End	Confidence
Cytoplasmic	1	37	0.94
Transmembrane Helix	38	57	0.90
Non-Cytoplasmic	58	61	0.68
Transmembrane Helix	62	80	0.81
Cytoplasmic	81	118	0.84
Transmembrane Helix	119	138	0.82
Non-Cytoplasmic	139	144	0.67
Transmembrane Helix	145	162	0.94
Cytoplasmic	163	203	0.96