YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr97a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFLRRQTRR LRSIWQRSLP VRFRRGKLHT QLVTICLYAT VFLNILYGVY LGRFSFRRKK  60
   61 FVFSKGLTIY SLFVATFFAL FYIWNIYNEI STGQINLRDT IGIYCYMNVC VCLFNYVTQW 120
  121 EKTLQIIRFQ NSVPLFKVLD SLDISAMIVW RAFIYGLLKI VFCPLITYIT LILYHRRSIS 180
  181 ESQWTSVTTT KTMLPLIVSN QINNCFFGGL VLANLIFAAV NRKLHGIVKE ANMLQSPVQM 240
  241 NLHKPYYRMR RFCELADLLD ELARKYGFTA SRSKNYLRFT DWSMVLSMLM NLLGITMGCY 300
  301 NQYLAIADHY INEEPFDLFL AIVLVVFLAV PFLELVMVAR ISNQTLTRRT GELLQRFDLQ 360
  361 HADARFKQVV NAFWLQVVTI NYKLMPLGLL ELNTSLVNKV FSSAIGSLLI LIQSDLTLRF 420
  421 SLK

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.64
Transmembrane Helix	28	51	0.81
Cytoplasmic	52	60	0.64
Transmembrane Helix	61	84	0.84
Non-Cytoplasmic	85	99	0.63
Transmembrane Helix	100	118	0.72
Cytoplasmic	119	151	0.70
Transmembrane Helix	152	175	0.85
Non-Cytoplasmic	176	201	0.64
Transmembrane Helix	202	220	0.69
Cytoplasmic	221	281	0.94
Transmembrane Helix	282	304	0.85
Non-Cytoplasmic	305	317	0.88
Transmembrane Helix	318	339	0.94
Cytoplasmic	340	423	0.73