YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr98a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQMSGELHA ASLLYMRRLM KCLGMLPFGQ NLFSKGFCYV LLFVSLGFSS YWRFSFDYEF  60
   61 DYDFLNDRFS STIDLSNFVA LVLGHAIIVL ELLWGNCSKD VDRQLQAIHS QIKLQLGTSN 120
  121 STDRVRRYCN WIYGSLIIRW LIFIVVTIYS NRALTINATY SELVFLARFS EFTLYCAVIL 180
  181 FIYQELIVGG SNVLDELYRT RYEMWSIRRL SLQKLAKLQA IHNSLWQAIR CLECYFQLSL 240
  241 ITLLMKFFID TSALPYWLYL SRVEHTRVAV QHYVATVECI KLLEIVVPCY LCTRCDAMQR 300
  301 KFLSMFYTVT TDRRSSQLNA ALRSLNLQLS QEKYKFSAGG MVDINTEMLG KFFFGMISYI 360
  361 VICIQFSINF RAKKMSNEQM SQNITSTSAP I

Type	Start	End	Confidence
Cytoplasmic	1	30	0.87
Transmembrane Helix	31	52	0.81
Non-Cytoplasmic	53	74	0.86
Transmembrane Helix	75	95	0.89
Cytoplasmic	96	130	0.93
Transmembrane Helix	131	150	0.86
Non-Cytoplasmic	151	171	0.68
Transmembrane Helix	172	194	0.71
Cytoplasmic	195	233	0.85
Transmembrane Helix	234	249	0.75
Non-Cytoplasmic	250	348	0.81
Transmembrane Helix	349	370	0.84
Cytoplasmic	371	391	0.83