YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr98b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAQKSRLLA RAFPYLDIFS VFALTPPPQS FGHTPHRRLR WYLMTGYVFY ATAILATVFI  60
   61 VSYFNIIAID EEVLEYNVSD FTRVMGNIQK SLYSIMAIAN HLNMLINYRR LGGIYKDIAD 120
  121 LEMDMDEASQ CFGGQRQRFS FRFRMALCVG VWMILMVGSM PRLTMTAMGP FVSTLLKILT 180
  181 EFVMIMQQLK SLEYCVFVLI IYELVLRLRR TLSQLQEEFQ DCEQQDMLQA LCVALKRNQL 240
  241 LLGRIWRLEG DVGSYFTPTM LLLFLYNGLT ILHMVNWAYI NKFLYDSCCQ YERFLVCSTL 300
  301 LVNLLLPCLL SQRCINAYNC FPRILHKIRC TSADPNFAML TRGLREYSLQ MEHLKLRFTC 360
  361 GGLFDINLKY FGGLLVTIFG YIIILIQFKV QAIAANRYKK VVN

Type	Start	End	Confidence
Cytoplasmic	1	11	0.81
Transmembrane Helix	12	28	0.63
Non-Cytoplasmic	29	45	0.54
Transmembrane Helix	46	67	0.90
Cytoplasmic	68	142	0.79
Transmembrane Helix	143	165	0.86
Non-Cytoplasmic	166	188	0.77
Transmembrane Helix	189	206	0.71
Cytoplasmic	207	251	0.82
Transmembrane Helix	252	275	0.83
Non-Cytoplasmic	276	369	0.79
Transmembrane Helix	370	390	0.88
Cytoplasmic	391	403	0.80