YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0309606, CG1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	90	0.97
Transmembrane Helix	91	113	0.88
Non-Cytoplasmic	114	123	0.72
Transmembrane Helix	124	148	0.88
Cytoplasmic	149	166	0.86
Transmembrane Helix	167	192	0.78
Non-Cytoplasmic	193	208	0.89
Transmembrane Helix	209	230	0.91
Cytoplasmic	231	237	0.80
Transmembrane Helix	238	258	0.92
Non-Cytoplasmic	259	285	0.89
Transmembrane Helix	286	306	0.92
Cytoplasmic	307	319	0.84
Transmembrane Helix	320	342	0.89
Non-Cytoplasmic	343	359	0.87
Transmembrane Helix	360	383	0.88
Cytoplasmic	384	411	0.96
Transmembrane Helix	412	431	0.93
Non-Cytoplasmic	432	438	0.61
Transmembrane Helix	439	462	0.80
Cytoplasmic	463	609	0.94
Transmembrane Helix	610	631	0.87
Non-Cytoplasmic	632	639	0.62
Transmembrane Helix	640	656	0.57
Cytoplasmic	657	712	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNSSEGNGN GGRRTVDWQR FGLGGDEDGD VAVTSFRQRT NNNTGGFVDL GNEYTYAAGG  60
   61 HHASGANEIF AGEQGDKPWW RSNFFISQPV LFGTWDGVFT SCLINVFGVI VFLRSGWIVA 120
  121 QAGILNAVLI IFCTVVIALV SVLSAIGICE RCRVESGGVY FLIAHTLGSR FGGALGLLYC 180
  181 FGQAVGCALN VMGFGESMAG LVGLEGSKWA IRGFATAAVL LLGCINVAGV KWVIKLQFIL 240
  241 LMILLISALD FMVGSFTSEA SGGFNGWASG NFVENLWPKY DDGYSWFRVF GVFFPTVTGV 300
  301 LSGINMSGDL RAPSTDIPNG TLAAFGTSTF LYLVFVLFLG ATCQRSFLYT DYMISVKVSA 360
  361 VHFLLLAGIY VSSMSSCLGA MYGTPRVLQS IAKESVIPGI DILGKGRGPN KVPLYAMAIV 420
  421 ALVTVTFIIV GDINFLAPIV TMPFLLTYAC IDYAYFALAQ TFDIQEQREE RFRIQASSPS 480
  481 YETRRYGSVS DTGNDLDLLF PDRVRHKNLQ SPQNSPLHQT VPLEFDNEGP STSNQAQSSE 540
  541 RRTGHEADTT LAVEQAVAQA GVEQDQGDEA EPIAPIRPPI HSKTKNWYSG YCNRWASLLG 600
  601 AFTKLLVMLL VNWYYALTCF LVVFVVWFYV GTANPAVKPG LTAEFNFFAW LKSVIFRCFG 660
  661 KRMNEYEQIV VTPSCPGVDL SPTQLNEQNE DFRPRPNYHH SSVIEGRLID DI