YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4615-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSEGSGHE SGIRTLNRNA NGNGNGDLSL MQDLQHKYAF LENLFSKFWK SIIKSNSNLK  60
   61 LQLRNVKWKN AKAKPGCAYQ PTEIEQVANV ITHGIWILPA VFAAIKLFER SSSASQYLVA 120
  121 WVYGGALCML FTVSTFFHCS CYCAEHKPPK NVKAWPCLGW QTYQGLKNVL HRCDRAMIYV 180
  181 FIAGSYFPWL TLENTDHSAI LFCMEWVIWL MAGIGIAYQQ VFHERYKCLE TFFYLVMGLG 240
  241 PALVVVFTGH HFHGMMQLKF GGGFYILGIV FFKADGTIPM AHAIWHLFVV LAAGCHYYAI 300
  301 LVNLYPSEGA AAP

Type	Start	End	Confidence
Cytoplasmic	1	88	0.74
Transmembrane Helix	89	108	0.66
Non-Cytoplasmic	109	118	0.72
Transmembrane Helix	119	140	0.90
Cytoplasmic	141	174	0.80
Transmembrane Helix	175	192	0.79
Non-Cytoplasmic	193	197	0.87
Transmembrane Helix	198	222	0.85
Cytoplasmic	223	230	0.89
Transmembrane Helix	231	252	0.91
Non-Cytoplasmic	253	257	0.69
Transmembrane Helix	258	274	0.69
Cytoplasmic	275	282	0.55
Transmembrane Helix	283	302	0.91
Non-Cytoplasmic	303	313	0.63