YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fz4-PA, fz4-PB
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.97
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	234	0.99
Transmembrane Helix	235	257	0.88
Cytoplasmic	258	269	0.82
Transmembrane Helix	270	289	0.87
Non-Cytoplasmic	290	324	0.91
Transmembrane Helix	325	345	0.90
Cytoplasmic	346	386	0.95
Transmembrane Helix	387	407	0.78
Non-Cytoplasmic	408	430	0.77
Transmembrane Helix	431	454	0.76
Cytoplasmic	455	484	0.92
Transmembrane Helix	485	505	0.94
Non-Cytoplasmic	506	525	0.88
Transmembrane Helix	526	546	0.88
Cytoplasmic	547	705	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPTCILCLL VVILLHPRIS KSSTSGNPSA SSSSSSPPEI PAFRQCETIR IEMCRKIGYN  60
   61 ETSMPNLVGN EMQTDVEYTL QTFAPLIEYD CSSQLKLFLC AAYVPMCTPK APVHAIGPCR 120
  121 SLCESVRIRC HPVLQGFGFP WPPALDCDKF PRENNHETMC MEGPGELHQP QQEQDLYGLP 180
  181 GQGIPGGLGG KLPMDCSGLA KSHLYVRLPR SGRCAPLCEA DILFTPAEKH LAEIWVSTWA 240
  241 YAALGLALVA TVCLLASDGS RLASAKWSRL LSPLIWCHNM VTLGWAVRFM VGRTGTACGT 300
  301 DPQAPNESLL TVDGLSNASC ASVFLMRYYF GMAACAWWAV LCLGWHRDIR RHSPDSKGHV 360
  361 VIPSNFGGSP AKRNSAKTAQ QDLTQNNFVC FVAWGLPAFQ TSAVIVARFV DADELLGACF 420
  421 VGNQSDKALQ ILVATPVFCY WIFGSMNLIS GYLVHCRTKE ILRNSNALSV QQQLQQLSAH 480
  481 SSSGIGIFLF IYGLACAMLL LAVIYEFANI DVWLGSGDTN TPLWPFLLRA FMELMLGICC 540
  541 FAWVLGPSIS TLYKRQVSNG KMVKHTSAGA ATGHLDGHSS SRGSHAACNS TVVSYHSVRT 600
  601 SMASVPLPPS PYKLKTSPGT GSISLNQMSN YSLGRSVHHQ QRHSPHHHHH QQQQHHQFHP 660
  661 HHNHQHHSTS SHRLYYPPGS YASQKYSQHG SYYPHLQQYG NETLL