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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Smr-PC, Smr-PB, ...
Protein type: Globular with Signal Peptide
Type Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWKQLYAPL QCRSVLRRPQ TTTTAAAAAA ATATTTTLAT ITTIAATAAT TTHQTVRNSS  60
   61 NNNTISSSSN IISSNVLLPA ATSNSNNNNY SNSSSSSSNN SSSSSSSSMI MDQRPIICIN 120
  121 HLSASLISRI KRRNSSSSSS SSNTKSSNNN RLPACPRISN ACHQMQHPFT GEALEQQQQY 180
  181 AKQAAHLQQQ QQHQSHQQQQ QQQQQDQRTN LHLQIHHHHQ QQQQQQQQQQ QQQQQQQQQQ 240
  241 QQKQQQHHMQ QQQQQQPLSP PHPPGSSSNS SSAAAAAAAA AAAAAAVNPG YPPSSAAAAA 300
  301 VNSGYPPRPP QHRFIQNTGY SIAPAPTYRD NPYSRHTQIQ QQQQQQQQQQ QQQQQQQQQQ 360
  361 QQAAASMPEY QRAAARAAVA AVSAGKGNVS GQSSNSSSSS SGGGGGGGSA GGSAPPGGGV 420
  421 VQVSQSGGVL VMEAMPHYAS QPNSNPSQQQ QQQHQQQQGG NPSGAGATSG AGGGGGGSGG 480
  481 SVMVGSLGRI LMPHPQALQY TSEYLTNATA AVAAAMVNQR QHLQLQQQQQ QQHPPEPFGG 540
  541 QQPYKKQRLS EANANNMNHL PPHPQQQHQQ QQQQQQQHQA HQQQHQRSSP AQVQQQQQQQ 600
  601 MNSSRQSHND MCRQVVTTPM GMQLKVETLP QQQQKQQQHQ QQQQQQQQQG RSQPVVSSMS 660
  661 TVVSQPVGTV TVTTAGLSAS HSGSSGNVAA GLGTGNTGSA STEAYHPQVE AISPTLPSDS 720
  721 SIEERGRTSA KEDLLMQIQK VDNEIKSAET TMETLRKKEK SLMEEAALAK EQRAAKELND 780
  781 NNNDQEPMVE LSWRSQMLAE KIYAANRKTA QAQHSMLQNA AADESSPGSV AGRPWLPLYN 840
  841 QPLDVEALAM LIRQHQSQIR APLLLHIRKL KAERWAHNQG LVEKYTKDQA DWQRRCERME 900
  901 ASAKRKAREA KNREFFEKVF TELRKQREDK ERFNRVGSRI KSEADLEEIM DGLQEQALED 960
  961 KKMRSYAVIP PLMHDARQRR CAYHNENGLI EDMVAVHQQR KALNMWTAGE KETFKEKYLQ1020
 1021 HPKNFGAIAA SLDRKSPQDC VRYYYLSKKT ENYKQLLRKS RQRTRSSRNP AKAQAAQPQC1080
 1081 IIDSMTTGVM TRLQREQQQK SGGRSSAVAE RERAERAAER ERVAEKAAAD AAKAAESAAE1140
 1141 KASAATKAVE ATAAGEKVAK AAAAAAAAAA TTATTATTTT SSSTSSSSSS ASSASTASSS1200
 1201 TASPATLAGI AADKTDAGKT ASASDKNAAT AGGPTATGTP TAATTPATAT APPEISAGGE1260
 1261 AKSKNAEEEA AATAGAATVA TAGTPATGAS AASAGEATTA TGATATAAAK GVGKPETATE1320
 1321 PAGTAAKGAD SRPDANDPLA KTASKAINAE GYNAIGGNSS SSSSNATGAS APVQGVTLNG1380
 1381 FKPGYQTVVM ANVKASTGGD DSGANAGGAA PGSLAATNAS IATSGDKIVK TTPSSRAPNS1440
 1441 TSSTAANESS SGAGVNTYGH TATTAGNYLG QKLKAAQVEG LGAGNELHSD VSESKRKRFE1500
 1501 LNSGEAGGNA TSAMTNSSTS GSMNISNSHG LKANAKDGSM MAKTSMASTS SASVVVTSTP1560
 1561 SASSSSLSSA SSMLLISAAS VMSTAAGATS SSTATTTATA SAISLPLLAD GSGNSMVNAN1620
 1621 EILALDGKDK LASCFVCKAE ACPRTRPLKK GRGQQYGIPD ETIPAGARVC NSCQCKSVRS1680
 1681 RYPNCPLPTC PNPKDRAQRL RNIPSRLFEL APEVRDPLMA EFQIPPHATR CCSACLMRIR1740
 1741 RKLDPQLNLT DGSSGGAGSG SGGDETDVST SSCDEREPGG SDTASVESPE NLQRHKSLTM1800
 1801 VKQQQQQQQQ QQQQQQQQQQ QQQQQLSQPQ PPPPAPQQQK GSSGRGGDQG TPLIITPTRM1860
 1861 SSKSGSGGAQ TAGDNERLLP PAAGQAPKKQ KTSEEYDSSA TETADEENEN SPANRQSPKV1920
 1921 LFHGHGHGHG GHANNVAGLQ PPVANMGTGG GVQPGGAAGQ QVNGPISMRR EAVNNVQDCV1980
 1981 FSVIERSLKH KGPQPKGGQG QQQGQGQGQG QGQGQTPGQS QSPSQQQQQQ QQQQSANNLE2040
 2041 RKELTIVREY RQDPGILKQQ QQQQQAGGAP PTSAAGSLPH GTSVQKLTTR PAAVAPPPPA2100
 2101 HPLTPTSTGC AGSNNGTSDS LATLSVVNSH MGMVGIGHPG PMAHASSAGG IGVDKATITP2160
 2161 VVKSSSGSSK SGGGSASSHS TATPPETIIY NVPVAHPQRG IPPPSQHSVH PAHPSHTQHP2220
 2221 AHPQHSSHGQ HTQLQVPEPE PQTLDLSIKK PPRDGHSPHT GAGGSSSSGS GSGGPSSSDR2280
 2281 HHGPPPPTMS MKHIVRSGGM YRGDTVTVPS LAAPSSYLYP TRSVKTIGGG GVVPGVLPGV2340
 2341 PGSALYLQPV PVPVPISISG QGQLPPRAGQ PPPAQPPSGR GVAKVPPKLS PQQAHHLHPS2400
 2401 HGHSPSQQQQ QQQQQQQQQQ QQAAAAQQQL LVKSGSITHG TPANSAQQQI IVHAPATAAA2460
 2461 APSSLLSPKF DGLVRQTTPE GVGSVGPGGA SGSGKHGSIT QGTPLHMPPH HLESKRPYES2520
 2521 YYKSSQRHSP AQQPGGNQQL PPPPQQSSPQ APPPQGYGVG VSSPYARSPF AGVVEQPQVL2580
 2581 STRQIVMHDY ITSQQMQGQQ QQQQQQQQQQ RNMSRGSSAS GGGGGGGSDK ESPSPRNSVG2640
 2641 SASGFAYGGD KESAPRGRPE YSSRASPADH VNSTPSPHRT PPPQRQGVIQ RHNTGSKPPS2700
 2701 PAAPPPSRMH MPPYQYAPSG HDALASFVDV AVQQPQLPVP SQKDDKSPGP STAPGQVPGS2760
 2761 GPPLGPSPLP PHAVVGVAQP PPPTAHHDQR YRDLTLHHHH HTLVQQQIAQ QQHYRSLNVA2820
 2821 AQVDMQRQMD QAKRVMRHQQ HQVQQQQQQQ QQQQHNHALE RDREMQERMR ERDRERERER2880
 2881 EREQRERERE RERERERERE RREQDRARRV VAEEREHDSR RMERMFAGNV VTGSGGAGGG2940
 2941 GPSPGQFLRA SVPETGPPRS IPDRERESYY RQAHGGPAPE DTPGQLSAQS LIDAIIKHEI3000
 3001 NRSNDATAGP GREFPRPSFV HAPLPPRGSG SGGGTGTRSS PANVLHPMYL RDLRQPLDGG3060
 3061 AGSMLTAENN GKPSSSGSPS VINIDLDQER ISAAAAAVAQ QQQQQQAPPP SQSSQSRSVH3120
 3121 GQLRTPTSQA GGSAPSPQQI HTKSITFGEL TDSIITSDYG TNPHLRPPYM AYLQETQSIL3180
 3181 PPDRWKQNRR MQQKAEEAKH HSQQQQQQQH QQQHHAQQQQ QQQQQHHAQQ HHPQMPGTGS3240
 3241 GSAPGGAGQG GGSGGPGSGG GGAGRASTPG EDGRNIIRMP QAVSPRKFNH EMMLHHVMGT3300
 3301 TGAGGEAGQF FLPSRVVLPE QRGTPSGGGG APGAGGPGSG GGATTIEKYV KTRIAEVMRD3360
 3361 DIGYGKNRTV EVRTEDEVTA DMVAHSHAAV HAAHVAHAAH VAHAAAMELQ HRSKEPPPPE3420
 3421 ISVSRKTPNQ YEVVDASGRR SAGSGSVSVS VSGANSHHSP YHPPAAAYAP STYAFPYSAL3480
 3481 NVPGAAGGLP PHQPLQLAHQ AVAPPGAFAK AKAAHALSEL GAVGGGVSLV VGGGSGGIAG3540
 3541 GPGGVSVGVG VPGGGGPGSG GGGGGGHNSS SSQASAAVAA AVAAAASESK PLLLSKYDAL3600
 3601 SDED

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