YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8051-PA, FBpp0...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.87
Transmembrane Helix	83	104	0.88
Non-Cytoplasmic	105	123	0.67
Transmembrane Helix	124	141	0.80
Cytoplasmic	142	152	0.65
Transmembrane Helix	153	172	0.92
Non-Cytoplasmic	173	181	0.65
Transmembrane Helix	182	205	0.80
Cytoplasmic	206	212	0.90
Transmembrane Helix	213	233	0.94
Non-Cytoplasmic	234	241	0.76
Transmembrane Helix	242	261	0.93
Cytoplasmic	262	423	0.98
Transmembrane Helix	424	445	0.88
Non-Cytoplasmic	446	459	0.77
Transmembrane Helix	460	479	0.94
Cytoplasmic	480	488	0.79
Transmembrane Helix	489	508	0.91
Non-Cytoplasmic	509	513	0.75
Transmembrane Helix	514	538	0.78
Cytoplasmic	539	549	0.81
Transmembrane Helix	550	571	0.92
Non-Cytoplasmic	572	577	0.82
Transmembrane Helix	578	598	0.95
Cytoplasmic	599	616	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDNGNNHNN NNNNNNDEAL RLRLPEEQAE QLLPKNGSAG QTKIAPPTHT HSIAAASVPQ  60
   61 KVPAKKKRDK SDLGEDFVAP DGGWGWLVSV ASGVNILVTF ALAQQFGILF RDRMAGLGIS 120
  121 SSELTTIINT QIAVSAFTGL LNGPLFRRYT YRVVALVGSV LTFLGLFWMV FADTFAVYIM 180
  181 SFSILYGFGR GLTVSASSLA VNTYFKVKRR TATAFQFGVA GLGPIVCPYF ATYMLYEFGV 240
  241 QGTTLLFAGA SLHTIACSLI YQPVKWHVVK RDRDAEALQQ VQPLAEREDQ DEDIIKNVVE 300
  301 PETPVLPRAN DGWFGSRASL NSVGTRNRLN TWEKSDSNGH VELKRLSSKD SNPGRQLRSI 360
  361 SVSHSIKEEE ATGYNSDHEV QHTELTEKEK QELEDEKERQ RRKKLPFYMK VVIFFDMDLL 420
  421 RDITYVNLAV GITLINFVEI NFAILTPFIL SDLGFNKDQI ALAMSTLGFF DLVVRFLIPL 480
  481 ITAKINLSNR TFFVVGILGM CIGRMFLSMT SNFYVMMAIF LWLGLNKAFR TVFWSLIIPS 540
  541 YVPLKRLPAA AGLQLLMSGT FSMIFGPLIG LIRDHTSYAV TLNLLNALCV MAFAGWYLED 600
  601 FIRARSRKSP PVKSIN