YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0311838, CG1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	42	0.92
Non-Cytoplasmic	43	83	0.95
Transmembrane Helix	84	108	0.84
Cytoplasmic	109	117	0.80
Transmembrane Helix	118	138	0.92
Non-Cytoplasmic	139	144	0.74
Transmembrane Helix	145	163	0.94
Cytoplasmic	164	173	0.72
Transmembrane Helix	174	191	0.80
Non-Cytoplasmic	192	208	0.60
Transmembrane Helix	209	230	0.82
Cytoplasmic	231	239	0.79
Transmembrane Helix	240	261	0.91
Non-Cytoplasmic	262	270	0.76
Transmembrane Helix	271	290	0.92
Cytoplasmic	291	300	0.92
Transmembrane Helix	301	324	0.89
Non-Cytoplasmic	325	363	0.94
Transmembrane Helix	364	383	0.92
Cytoplasmic	384	390	0.76
Transmembrane Helix	391	408	0.80
Non-Cytoplasmic	409	411	0.47
Transmembrane Helix	412	431	0.77
Cytoplasmic	432	466	0.57
Transmembrane Helix	467	489	0.85
Non-Cytoplasmic	490	713	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLDVGGVAR GLLTWDKQEH LVKLAILILA AVLSFATRLF SVLRFESVIH EFDPYFNYRT  60
   61 TRFLAEQGFY KFHNWFDDRA WYPLGRIIGG TIYPGLMLTS AALYRLMWLL NVTIDIRNVC 120
  121 VFLAPFFSSL TTLVTYALTK EIHSTGAGLV AAALISIVPG YISRSVAGSY DNEGIAIFCM 180
  181 LFTYYLWIKA VKTGTIFWSA MSALAYFYMV SSWGGYVFLI NLIPLHVLAL MITGRFSHRI 240
  241 YIAYSTLYCV GTILSMQISF VGFQPIQSSE HMLALGTFGL CQIHAFVDYL RSRIPKDHFD 300
  301 LLFKTLVSSV LTVVFVVGTL LTLTGKVSPW TGRFYSLLDP SYAKNHIPII ASVSEHQPTS 360
  361 WSSFYFDLQI LVFLFPAGLY FCFSKLTDSN IFIILYGVTS IYFAGVMVRL MLVLAPVMCV 420
  421 LSGIAISHLL AKYIKSVDAG SSSKQGVESK RQHKKLEQQT GGVKSEVAIG FVGVITLMLI 480
  481 VYTLHCTWVT SEAYSSPSIV LSARSHDGGR IIFDDFREAY YWLQMNTPED ARIMSWWDYG 540
  541 YQITAMANRT ILVDNNTWNN THISRVGQAM ASSEEKAYEI MRELDVDYVL VIFGGLTGYS 600
  601 SDDINKFLWM VRIGGSTDRG AHIREKDYYA ANGEFRVDKE GSPTLLNCLM YKMCYYRFGQ 660
  661 MYTEGGKAQG YDRVRAAEIG NKDFELDVME EAYTTEHWLV RIYKVKDLPN RGV