YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3915650, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLSTKFQGH PYHIVSASPW PFFLSVVLFF NCLAATLYLH GYKHSSVFFG ISFLGLLATM  60
   61 YLWFRDMSTE ANIHGAHTKA VTKGLKIGFM LFLISETFLF ASIFWAFFHS SLSPTFELGA 120
  121 VWPPVGIADK TIDPLEVPLL NTVILLTSGA SLTYAHYSLI ARNRENALKG LYMTIALSFL 180
  181 FLGGQAYEYW NAPFTISDSV YGASFYFATG LHGIHIIVGT ILLLAATYNI YTYHLTNTHH 240
  241 NGFECGIYYW HFCDVVWLFL YLTIYIWGS

Type	Start	End	Confidence
Cytoplasmic	1	19	0.88
Transmembrane Helix	20	39	0.94
Non-Cytoplasmic	40	45	0.78
Transmembrane Helix	46	64	0.96
Cytoplasmic	65	84	0.94
Transmembrane Helix	85	108	0.91
Non-Cytoplasmic	109	138	0.93
Transmembrane Helix	139	160	0.88
Cytoplasmic	161	167	0.92
Transmembrane Helix	168	187	0.92
Non-Cytoplasmic	188	210	0.84
Transmembrane Helix	211	231	0.92
Cytoplasmic	232	246	0.87
Transmembrane Helix	247	267	0.93
Non-Cytoplasmic	268	269	0.83