YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mam1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.95
Transmembrane Helix	96	117	0.86
Non-Cytoplasmic	118	153	0.86
Transmembrane Helix	154	174	0.94
Cytoplasmic	175	229	0.93
Transmembrane Helix	230	249	0.81
Non-Cytoplasmic	250	256	0.61
Transmembrane Helix	257	276	0.92
Cytoplasmic	277	332	0.80
Transmembrane Helix	333	355	0.70
Non-Cytoplasmic	356	366	0.61
Transmembrane Helix	367	388	0.62
Cytoplasmic	389	778	0.93
Transmembrane Helix	779	802	0.92
Non-Cytoplasmic	803	817	0.93
Transmembrane Helix	818	840	0.91
Cytoplasmic	841	896	0.96
Transmembrane Helix	897	917	0.89
Non-Cytoplasmic	918	922	0.72
Transmembrane Helix	923	943	0.91
Cytoplasmic	944	1000	0.97
Transmembrane Helix	1001	1023	0.88
Non-Cytoplasmic	1024	1042	0.86
Transmembrane Helix	1043	1064	0.85
Cytoplasmic	1065	1336	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIHSDLSLP QFEHASIDPP SYSPQKSSFE EKKHNFSITN KSLETLRSQE SPCSTTFPVS  60
   61 DRKDALLNIP TVVDDEFQHT EELAGVSSWS DFFYLFHFSD IPLIFGTLIF TCLSAALEPL 120
  121 MTWTTGKVFD ALSQYATSQI TLGKMISLIN FNSLLITIFG LASCVFSFGV RFLWQYLSAI 180
  181 AGKRARSLCF HVLSSKSSTF YSLTESKSGL VNSVDRCIQF YEKSISLPMF HIAENLAISL 240
  241 SCLIISFRYS WSLTLVVLAS YPIIILVVGF INSFLSSAYE KDRKSSEKAA SILEKSISAI 300
  301 QTVIFHSMQD TEYRYFADAC STSSKSFLRF SFLDAFQGGV SQFFLYSVFF QGLWFGNHLA 360
  361 TTKRVNVGQV VTVFGSCLSV ASSLQQILPA IPDLIKGKFS SHFIKTLCES HDPIEAAKRS 420
  421 AAKIKSISFE RGFRFDNVSF AYPSRDENLF SLINVSVFIP FGELVHIIGP SGSGKSTFIS 480
  481 LLLRYFSPTY GNIYLDDFPL EEIDEHVLGS TITLVCQQPV IFDMTIRENI IMRNENASES 540
  541 DFEEVCRLAL VDEFALTFDQ SYDTPCKEAS LSGGQQQRIA LARALLRDTE ILILDEPTSA 600
  601 LDPITKNLVM DAIRAHRKGK TTLVITHDMS QINNDELVLV IDKGHLIQRC ARKELVLFED 660
  661 FENNVSIDEK VLKEEADNPF ILPNEESLLE KYWINYNESF SQLSRESLFT SLESPFTDIE 720
  721 SPTIVSRRKI VEQRKLRMEK ESFQETNVDQ TFHLFDDKEH ACSLTLIFKS IWKVKKLRWF 780
  781 FLLGLLTSLI QGASVPIFAY VISKCLNLFM QIDPSIGVAF WSSMVLVVAA GSGASYFFSH 840
  841 YIFSISAKIW CDHYRLLAVK VLFTQDQAWF DQIENYPLVL SKILVNNISD MRNMISSLIE 900
  901 EVFIAFTMAI IGIAWSFATG WRLAAVLVAV SPILCLTSRM FSYIYVSTER MCQDVVISTT 960
  961 SILHKTIVNL DTIKGYSVLS FFRENHKNSL RKSWEAFKRR AFWTSLGFAI NNSLLYFVRA1020
 1021 LLFYCSSIFI SKEFYTVEQM VQVLSLATFT LLMASTCIMS LPNVSASRIA TSRVLKLSSL1080
 1081 KPGNLHKSGY LKFPLVGKIE FDGVSFAYPD SERNHLALNN VSLSIEAREK VAIVGISGSG1140
 1141 KSTLVELLRK TYPSEDIYID GYPLTNIDTN WLLKKVAIVD QKPHLLGSTI LESLLYGVDR1200
 1201 DINSVMDALD KTYMTEVIQN LPNGLDTPLL EFSKNFSGGQ IQRLAFARAL LRNPRLLILD1260
 1261 ECTSALDSKS SLLLEKTIQN LSCTVLIITH QPSLMKLADR IIVMDSGIVK ESGSFDELMN1320
 1321 RHTHFWKLIH RGEWIE