YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YA33_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGRLEIYS VKRNVLNMFS IVIVSATYSI SLDSTVLYPA VYHAIVNQPM LGARIHNCHS  60
   61 KIPIVKKLKT IDLDKVVKYA DDQKVDSFCN NALQNFKLCY DDETLPLWMV YVLNDKSELV 120
  121 FIYDHSLFDG GSGPLFHKYV LEGLQMSKTN FSSSTVPVSE LPLPKNLEKL IDVHPSWFCL 180
  181 MKALWTNSGL PFSKGFRSPS YKGHAPVRPF SSHTIFFSIS NAVVKNIKQL SKNIDASFTS 240
  241 IFYSVFMLSI YYAIAKNGKV NLDMLIDVNA RRFLPVAKQT MGNYVFSYVH HLNGFQPSQR 300
  301 QEDYKHTMVD LATEFSHRLK AALSNPREMS QQIGLLSYID IEDYLLKSCE KTRGNTAEIS 360
  361 NLGYFSFPAD SSVKIKNMAF AQPCSSLSAP FVLNVITVAD GPCSFSLSIF DDGNTEQTHE 420
  421 LAIKIRDKFL SILEKVSMNS

Type	Start	End	Confidence
Cytoplasmic	1	14	0.55
Transmembrane Helix	15	30	0.52
Non-Cytoplasmic	31	440	0.88