YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	atg22
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.86
Transmembrane Helix	21	43	0.88
Non-Cytoplasmic	44	84	0.95
Transmembrane Helix	85	107	0.90
Cytoplasmic	108	115	0.87
Transmembrane Helix	116	135	0.95
Non-Cytoplasmic	136	143	0.68
Transmembrane Helix	144	165	0.80
Cytoplasmic	166	239	0.95
Transmembrane Helix	240	261	0.91
Non-Cytoplasmic	262	268	0.86
Transmembrane Helix	269	292	0.84
Cytoplasmic	293	331	0.94
Transmembrane Helix	332	354	0.86
Non-Cytoplasmic	355	364	0.77
Transmembrane Helix	365	386	0.93
Cytoplasmic	387	394	0.78
Transmembrane Helix	395	417	0.88
Non-Cytoplasmic	418	430	0.83
Transmembrane Helix	431	452	0.85
Cytoplasmic	453	464	0.86
Transmembrane Helix	465	487	0.92
Non-Cytoplasmic	488	495	0.80
Transmembrane Helix	496	516	0.96
Cytoplasmic	517	529	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSPIQLHKK FSTTVWHVLS WILYAVGAGP TAIISMGVYV PLIVMKNAHD HGFLRTDHTI  60
   61 PCSLYPEEPC SLNIVGPLWI DVSSIVFAAS AISTFLQMAM MVSLGVICDY GNNRRYILFS 120
  121 CVIIGSISGI ILSWSPSSFL LGKIVFLILV DLNFIISQSC YDSFLPIFLR FYPITRGPIT 180
  181 LESALQDETD DLDSYITNTT IDSSEEEPYL LEHSLILNES APPADVEDEH KAKIAARLSS 240
  241 VGFGSFFGAA ILFQIIFTPI LYKTNNNPII LPITVTVCSC WWLILSTPLC TIVTLPVENH 300
  301 SSDAILTLLY NSVKESYHSF KHAMSISSIR LFLFSRLFIN CGIQTSLSSA VIFGKARLNL 360
  361 SNFQLTLLGM GISSFALLGT VIIPYLTEYF QLNSLQVVMI ISILLPMAPL YGLLGYIPGF 420
  421 ENAGIRTSAD VFRATLFFGF FLGGAHSYCR SVYAQLVPSG KETRFFALYA LISQTGVLFS 480
  481 HISLTLISNY TSDLRAVYIF VIVVMTLPLS SLWIMYQHSK TPNLHRSSS