YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC1039.01
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.98
Transmembrane Helix	67	90	0.89
Non-Cytoplasmic	91	99	0.70
Transmembrane Helix	100	119	0.92
Cytoplasmic	120	128	0.72
Transmembrane Helix	129	151	0.80
Non-Cytoplasmic	152	189	0.71
Transmembrane Helix	190	211	0.88
Cytoplasmic	212	219	0.60
Transmembrane Helix	220	241	0.91
Non-Cytoplasmic	242	261	0.69
Transmembrane Helix	262	281	0.79
Cytoplasmic	282	301	0.79
Transmembrane Helix	302	325	0.88
Non-Cytoplasmic	326	350	0.78
Transmembrane Helix	351	372	0.87
Cytoplasmic	373	403	0.82
Transmembrane Helix	404	424	0.91
Non-Cytoplasmic	425	431	0.71
Transmembrane Helix	432	453	0.94
Cytoplasmic	454	472	0.89
Transmembrane Helix	473	493	0.91
Non-Cytoplasmic	494	502	0.82
Transmembrane Helix	503	522	0.92
Cytoplasmic	523	567	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIMEKTDV SSSKHSFTFE PSSDEVGKAA EIVDTHENFY DDQGDIDNPE ELAELGYKQE  60
   61 FRRQLSLFGI FSISFSVLGM LPSVASTLVF GLWYVGYPGL LWAWLIAMFF LICVSMSMAE 120
  121 ICSAMPTSGG LYYAAAVFAP KGWGPLASWI TGWSNYIGNI IGQPSVNSSA ASMILGAVTV 180
  181 NRPDFVIQRW QWFLLAVAIQ CFNCVLACLP TRIISRINGV ATYLNTAFLF IAGITILAYG 240
  241 GKNHNFVKGT KIWGDYINTT QWPTGFAILL SFNSPIWTMS GYDAPFHLSE ECSNASVNAP 300
  301 KAIVMTAVIG GVVGWIMQII VAYTLTDIDS VMNTSGSMWT AYLVQAMPPK AALGILSLTI 360
  361 ISAIIMGQSA LIASSRIAYS YARDGILPFS GWIGTVNPYT QTPVNAVICN CIISILILFL 420
  421 TFAGTVTLDA VFSVGAVAAF IAFTVPIAIR VFFTKDADFR RGPWNLGKFS RPIGLLAVSF 480
  481 VALMIPILCF PSVKNPTAQE MNWTCLVYGG PMLFTLVWYA ISARKWFKGP KASAHYKRPG 540
  541 EESSDIVEGV QADIPSSSDQ LKIKGDL