YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC13A2.03
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKRTNKRN NSDKENGNVG VVQNKDSASS KTTEPARLTK HKSLARKPSQ NFITRTIWTF  60
   61 LLLGIFFTAL AMGHFWVVLL VTIVQIGVYK EVIAIASVPS REKDLPWTRF INWYFLMTTL 120
  121 YYAYGESIYA YFHHLFIMDS FMLPLVLHHR FISFMLYIIG FVLFVASLKK GNYKFQFSQF 180
  181 CWTHMTLLLV VGQSHFMINN LFEGLFWFFV PVCYVVCNDV FAYLCGKMFG KHPLIQVSPK 240
  241 KTVEGFLGGW ICTVVIGSLI SYVLMHFKYF ICPTRDLSTS AFSGLNCTPN SVFLPHTYTI 300
  301 PAVFVDTFRL PETITLAPIY FHLAIFATFS SLIAPFGGFF ASGLKRAFKI KDFGASIPGH 360
  361 GGLTDRMDCQ FLNGVFVYMY FQSFIAEKST SVADLLDTAV YSLTTTQQVQ LVEDLQNYLI 420
  421 SHGKTSVQAI CSKLLQNSK

Type	Start	End	Confidence
Cytoplasmic	1	51	0.87
Transmembrane Helix	52	71	0.87
Non-Cytoplasmic	72	74	0.55
Transmembrane Helix	75	98	0.73
Cytoplasmic	99	109	0.81
Transmembrane Helix	110	132	0.79
Non-Cytoplasmic	133	145	0.90
Transmembrane Helix	146	168	0.90
Cytoplasmic	169	179	0.80
Transmembrane Helix	180	198	0.93
Non-Cytoplasmic	199	204	0.88
Transmembrane Helix	205	226	0.92
Cytoplasmic	227	245	0.89
Transmembrane Helix	246	266	0.94
Non-Cytoplasmic	267	318	0.93
Transmembrane Helix	319	341	0.91
Cytoplasmic	342	439	0.93