YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC409.19c
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQLFIYSPG LGQPTMDPGC LAALIYCALA VPKDEIEILR TANSGMSPTH KLPALWDGHV  60
   61 WIGSLKNILI YLKQKGYNLD NFDAKQLANV MAFTSLLEGS VNDLWLLEAF VNEENFVEAI 120
  121 RPAWSKALKF PHNYLTPNAL QRQAKERLAQ TLGIRDEEVS YEASRMPISH KWTNATRHRQ 180
  181 ALLRTQARRI RISSLARQVY GSLESLISDS KFIFGEKPTS LDCLFYAYLS FHAFTNELPQ 240
  241 ATLRPCLQFN SPKLYAYLKS LRETWFSDDS NILSPLSIKV QPENLLTIAR LAWNNVTAKA 300
  301 NDTRKSITKF SVPPERKLLW ARNGFFIFAS AFSFVWFVIS NGIVVIETED DEASFEEVDD 360
  361 AKESIQEKEI DETTESKATH DSSETSSSKE LPKEEEKESS SFDLQPLSAQ DLLFSGFAED 420
  421 EIMDEEFGYD DDDDEEFDLD DLDDLEEEIV

Type	Start	End	Confidence
Cytoplasmic	1	318	0.63
Transmembrane Helix	319	339	0.74
Non-Cytoplasmic	340	450	0.77