YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC23G7.13c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.88
Transmembrane Helix	10	32	0.91
Cytoplasmic	33	51	0.86
Transmembrane Helix	52	72	0.87
Non-Cytoplasmic	73	85	0.84
Transmembrane Helix	86	106	0.94
Cytoplasmic	107	128	0.86
Transmembrane Helix	129	151	0.89
Non-Cytoplasmic	152	160	0.68
Transmembrane Helix	161	183	0.89
Cytoplasmic	184	192	0.74
Transmembrane Helix	193	213	0.91
Non-Cytoplasmic	214	251	0.94
Transmembrane Helix	252	274	0.87
Cytoplasmic	275	284	0.84
Transmembrane Helix	285	311	0.77
Non-Cytoplasmic	312	354	0.84
Transmembrane Helix	355	377	0.84
Cytoplasmic	378	395	0.90
Transmembrane Helix	396	418	0.92
Non-Cytoplasmic	419	425	0.80
Transmembrane Helix	426	447	0.94
Cytoplasmic	448	453	0.81
Transmembrane Helix	454	475	0.92
Non-Cytoplasmic	476	493	0.95
Transmembrane Helix	494	516	0.92
Cytoplasmic	517	550	0.97
Transmembrane Helix	551	572	0.90
Non-Cytoplasmic	573	582	0.92
Transmembrane Helix	583	607	0.87
Cytoplasmic	608	664	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQPELTQSV GYGIVVGLGL GFAALMIFVS WSLKKFNNEN QTSEHFNTAS HSVRTGLVAS  60
   61 AVVSSWTWAS TLLTSAQKTY QYGVSGAFWY ASGACVQILL FTVLAIELKR KAPNAHTFLE 120
  121 VVRARCGPIA HGVFLVFAYI TNILVMAMLL CGGSATISSV TGMNTVAVCF LLPVGVIIYT 180
  181 MFGGIKATFL TDYIHTVIIL VILIMFSLAT YSADKKIGSP GKLYDMLKEA GDAHPVAGNA 240
  241 QGSYLTMRSQ EGAIFFIINL AGNFGTVFVD NGYWQKAIAA NPASALPGYI LGGLAWFAIP 300
  301 WLAATTMGLV ALGLENKPYF PTYPNRMSDL EVSEGLVLPY AAIALMGRAG ANATLLLVFM 360
  361 AVTSAASAEL IAVSSIFTYD IYKQYVRPRA TGKELLYTGH ASLIVFGFAM SGFATGLYYG 420
  421 QVSMGYLYLL MGVLVCPAVV PATCVMLFSR VSTIAVTVSP VLGIISSIIT WLVVARAEGG 480
  481 KTLTIETTGA NNPMLAGNVV GLLSPALYIL ILSIIFPEKY DFNRLLATFA MHFSSEEDEI 540
  541 QQTKKLNRAS VISKVAALII TAAFIILWPW PMYGTGYIFS KRFFTGWVVV GLIWIFFTVF 600
  601 AVGIFPLWEG RNDIYQVVSN MAASIFGRKV NDIVEDEGVV VETISIGSGS KEKVNFEKKD 660
  661 IESV