YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC887.15c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTTVEMLTT WNPVTVSLVS PVIIYWVASA FFGFLHYIEL PVFEKYRIHP PEEIARRNRV  60
   61 PQMAVVKAVL FQQLCEVVVG IALAMFEGYP EPIDEAKQML RYEAFFSKNL PALLQVAPFA 120
  121 PKLAYNFIVP AFQYFFAFFI IDSWQYFWHR YLHYNKKLYN MIHAHHHRLQ VPYAMGALYN 180
  181 HPFEGLILDT FGAGVAYLAA GLSPQQAVIF FTLSTLKTVD DHCGYVFPYD PLQMFFANNA 240
  241 RYHDLHHQPY GFQKNFSQPF FTFWDHVLGT YMPPKSETPY EKKQKAKNAK KVN

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.79
Transmembrane Helix	17	38	0.87
Cytoplasmic	39	63	0.80
Transmembrane Helix	64	86	0.62
Non-Cytoplasmic	87	122	0.72
Transmembrane Helix	123	148	0.75
Cytoplasmic	149	293	0.63